4OJZ - JenaLib

Title :   CRYSTAL STRUCTURE OF ALG17C MUTANT Y258A COMPLEXED WITH ALGINATE TRISACCHARIDE

Authors :   S. K. Nair, D. S. Park

Date :   21 Jan 14 (Deposition) - 29 Jan 14 (Release) - 09 Apr 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym./Biol. Unit : A,B

Keywords :   Alginate Lyase, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Park, S. Jagtap, S. K. Nair
Structure Of A Pl17 Family Alginate Lyase Demonstrates Functional Similarities Among Exotype Depolymerases.
J. Biol. Chem. V. 289 8645 2014
PubMed-ID: 24478312 | Reference-DOI: 10.1074/JBC.M113.531111

Compounds

Molecule 1 - PUTATIVE ALGINATE LYASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-28B
	Expression System Strain	:	ROSETTA2
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	ALG17A, ALG17C, SDE_3284
	Mutation	:	YES
	Organism Scientific	:	SACCHAROPHAGUS DEGRADANS
	Organism Taxid	:	203122
	Strain	:	2-40 / ATCC 43961 / DSM 17024

Structural Features

Chains, Units

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (5, 10)

Asymmetric/Biological Unit (5, 10)

No.	Name	Count	Type	Full Name
1	BEM	2	Ligand/Ion	BETA-D-MANNURONIC ACID
2	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
3	LGU	2	Ligand/Ion	ALPHA-L-GULURONATE
4	MAV	2	Ligand/Ion	ALPHA-D-MANNOPYRANURONIC ACID
5	ZN	2	Ligand/Ion	ZINC ION

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:415 , ASP A:433 , HIS A:464 , HOH A:912 , HOH A:1482 , HOH A:1594	BINDING SITE FOR RESIDUE ZN A 801
2	AC2	SOFTWARE	SER A:301 , ALA A:303 , GLY A:304 , TYR A:372 , HIS A:397 , HOH A:1023	BINDING SITE FOR RESIDUE EDO A 805
3	AC3	SOFTWARE	HIS B:415 , ASP B:433 , HIS B:464 , HOH B:966 , HOH B:1389 , HOH B:1559	BINDING SITE FOR RESIDUE ZN B 801
4	AC4	SOFTWARE	SER B:301 , GLY B:304 , ILE B:318 , ILE B:342 , TYR B:372 , HOH B:923 , HOH B:1021 , HOH B:1028	BINDING SITE FOR RESIDUE EDO B 805
5	AC5	SOFTWARE	LYS A:136 , GLN A:146 , ASN A:149 , LYS A:198 , HIS A:202 , TYR A:257 , ARG A:260 , TYR A:261 , HIS A:413 , ARG A:438 , HIS A:449 , TYR A:450 , HOH A:947 , HOH A:950 , HOH A:1004 , HOH A:1076 , HOH A:1084 , GLU B:667	BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 802 TO 804
6	AC6	SOFTWARE	GLU A:667 , LYS B:136 , GLN B:138 , GLN B:146 , ASN B:149 , HIS B:200 , ASN B:201 , HIS B:202 , TYR B:257 , ARG B:260 , TYR B:261 , HIS B:413 , ARG B:438 , HIS B:449 , TYR B:450 , HOH B:931 , HOH B:938 , HOH B:944 , HOH B:953 , HOH B:986 , HOH B:1578	BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 802 TO 804

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:706
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..ee.............hhhhhhhhhhhhhhhh..hhhhhhhhhh....hhhhhhhhhhhhh..........eeee.......eeeeeeee......eeeeeeee..hhhhh.....eeeeee..eeee.............hhhhh.hhhhhhh..hhhhh...ee...hhhhhhhhhhh....eeeeeee...eeeeeeee......eeeeeeeeee........eeeeeeeeeeeeeeeeeeeee...eeeee.........eeee.....hhh.eeeeeeeee....eeeeeee..eeeeeeeeee.....eeeeeeee............eeeeeeeeeeeeeeeeeeeeee.eee....eee.....eeeeeeeee..eeeeeeee....eeeeee........eeeee....eeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ojz A  30 HPNLIVTEQDVANIAASWESYDAYAEQLNADKTNLDAFMAEGVVVPMPKDAGGGYTHEQHKRNYKAIRNAGFLYQVTGDEKYLTFAKDLLLAYAKMYPSLGEHPNRKEQSPGRLFWQSLNEAVWLVYSIQGYDAIIDGLAAEEKQEIESGVFLPMAKFLSVESPETFNKIHNHGTWAVAAVGMTGYVLGNDELVEISLMGLDKTGKAGFMKQLDKLFSPDGYYTEGPYAQRYALMPFIWFAKAIETNEPERKIFEYRNNILLKAVYTTIDLSYAGYFFPINDALKDKGIDTVELVHALAIVYSITGDNTLLDIAQEQGRISLTGDGLKVAKAVGEGLTQPYNYRSILLGDGADGDQGALSIHRLGEGHNHMALVAKNTSQGMGHGHFDKLNWLLYDNGNEIVTDYGAARYLNVEAKYGGHYLAENNTWAKQTIAHNTLVVNEQSHFYGDVTTADLHHPEVLSFYSGEDYQLSSAKEANAYDGVEFVRSMLLVNVPSLEHPIVVDVLNVSADKASTFDLPLYFNGQIIDFSFKVKDNKNVMKMLGKRNGYQHLWLRNTAPVGDASERATWILDDRFYSYAFVTSTPSKKQNVLIAELGANDPNYNLRQQQVLIRRVEKAKQASFVSVLEPHGKYDGSLETTSGAYSNVKSVKHVSENGKDVVVVDLKDGSNVVVALSYNANSEQVHKVNAGEEAIEWKGFSSVVVRR 735
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729

Chain B from PDB  Type:PROTEIN  Length:705
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhee..ee.............hhhhhhhhhhhhhhhh..hhhhhhhhhh....hhhhhhhhhhhhh..........eeee.......eeeeeeee......eeeeeeee..hhhhh.....eeeeee..eeee.............hhhhh.hhhhhhh..hhhhh...ee...hhhhhhhhhhh....eeeeeee...eeeeeeeeeeee..eeeeeeeeee........eeeeeeeeeeeeeeeeeeeee...eeeee.........eeee.....hhh.eeeeeeee.....eeeeeee..eeeeeeeeee.....eeeeeeee............eeeeeeeeeeeeeeeeeeeeee.eee....eee.....eeeeeeeee..eeeeeeee....eeeeee........eeeeee..eeeeee..eeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ojz B  30 HPNLIVTEQDVANIAASWESYDAYAEQLNADKTNLDAFMAEGVVVPMPKDAGGGYTHEQHKRNYKAIRNAGFLYQVTGDEKYLTFAKDLLLAYAKMYPSLGEHPNRKEQSPGRLFWQSLNEAVWLVYSIQGYDAIIDGLAAEEKQEIESGVFLPMAKFLSVESPETFNKIHNHGTWAVAAVGMTGYVLGNDELVEISLMGLDKTGKAGFMKQLDKLFSPDGYYTEGPYAQRYALMPFIWFAKAIETNEPERKIFEYRNNILLKAVYTTIDLSYAGYFFPINDALKDKGIDTVELVHALAIVYSITGDNTLLDIAQEQGRISLTGDGLKVAKAVGEGLTQPYNYRSILLGDGADGDQGALSIHRLGEGHNHMALVAKNTSQGMGHGHFDKLNWLLYDNGNEIVTDYGAARYLNVEAKYGGHYLAENNTWAKQTIAHNTLVVNEQSHFYGDVTTADLHHPEVLSFYSGEDYQLSSAKEANAYDGVEFVRSMLLVNVPSLEHPIVVDVLNVSADKASTFDLPLYFNGQIIDFSFKVKDNKNVMKMLGKRNGYQHLWLRNTAPVGDASERATWILDDRFYSYAFVTSTPSKKQNVLIAELGANDPNYNLRQQQVLIRRVEKAKQASFVSVLEPHGKYDGSLETTSGAYSNVKSVKHVSENGKDVVVVDLKDGSNVVVALSYNANSEQVHKVNAGEEAIEWKGFSSVVVR 734
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

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