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Title :   CRYSTAL STRUCTURE OF MAIZE CYTOKININ OXIDASE/DEHYDROGENASE 4 (ZMCKO4) IN COMPLEX WITH PHENYLUREA INHIBITOR CPPU IN ALTERNATIVE SPACEGROUP

Authors :   D. Kopecny, S. Morera, A. Vigouroux, R. Koncitikova

Date :   05 Jan 14 (Deposition) - 01 Apr 15 (Release) - 20 Apr 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Flavoprotein, Cytokinin Oxidase/Dehydrogenase, Phenyl-Urea Inhibitor, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Kopecny, R. Koncitikova, H. Popelka, P. Briozzo, A. Vigouroux, M. Kopecna, D. Zalabak, M. Sebela, J. Skopalova, I. Frebort, S. Morera
Kinetic And Structural Investigation Of The Cytokinin Oxidase/Dehydrogenase Active Site.
Febs J. V. 283 361 2016
PubMed-ID: 26519657 | Reference-DOI: 10.1111/FEBS.13581

Molecule 1 - CYTOKININ DEHYDROGENASE 4
	Chains	:	A, B
	EC Number	:	1.5.99.12
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PTYB12
	Expression System Strain	:	BL21 STAR (DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 22-541
	Gene	:	CKX4, CKX4 (CKO4)
	Organism Common	:	MAIZE
	Organism Scientific	:	ZEA MAYS
	Organism Taxid	:	4577

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 12)

No.	Name	Count	Type	Full Name
1	245	2	Ligand/Ion	1-(2-CHLOROPYRIDIN-4-YL)-3-PHENYLUREA
2	DMS	8	Ligand/Ion	DIMETHYL SULFOXIDE
3	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE

Biological Unit 1 (3, 5)

No.	Name	Count	Type	Full Name
1	245	1	Ligand/Ion	1-(2-CHLOROPYRIDIN-4-YL)-3-PHENYLUREA
2	DMS	3	Ligand/Ion	DIMETHYL SULFOXIDE
3	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE

Biological Unit 2 (3, 7)

No.	Name	Count	Type	Full Name
1	245	1	Ligand/Ion	1-(2-CHLOROPYRIDIN-4-YL)-3-PHENYLUREA
2	DMS	5	Ligand/Ion	DIMETHYL SULFOXIDE
3	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PHE A:57 , ALA A:95 , ARG A:96 , GLY A:97 , HIS A:98 , GLY A:99 , HIS A:100 , SER A:101 , GLN A:105 , ALA A:106 , THR A:169 , ASP A:170 , TYR A:171 , LEU A:174 , SER A:175 , GLY A:177 , GLY A:178 , THR A:179 , SER A:181 , ASN A:182 , GLY A:184 , ILE A:185 , GLY A:234 , ILE A:235 , ILE A:236 , TRP A:389 , TYR A:487 , LEU A:488 , GLN A:526 , 245 A:602 , HOH A:704 , HOH A:710 , HOH A:723 , HOH A:731 , HOH A:736	BINDING SITE FOR RESIDUE FAD A 601
02	AC2	SOFTWARE	ASP A:170 , VAL A:370 , TRP A:389 , ASN A:391 , LEU A:423 , LEU A:452 , TYR A:487 , FAD A:601	BINDING SITE FOR RESIDUE 245 A 602
03	AC3	SOFTWARE	TRP A:252 , THR A:359	BINDING SITE FOR RESIDUE DMS A 603
04	AC4	SOFTWARE	ARG A:238	BINDING SITE FOR RESIDUE DMS A 604
05	AC5	SOFTWARE	HIS A:430	BINDING SITE FOR RESIDUE DMS A 605
06	AC6	SOFTWARE	PHE B:57 , ALA B:95 , ARG B:96 , GLY B:97 , HIS B:98 , GLY B:99 , HIS B:100 , SER B:101 , GLN B:105 , ALA B:106 , THR B:169 , ASP B:170 , TYR B:171 , LEU B:174 , SER B:175 , GLY B:177 , GLY B:178 , THR B:179 , SER B:181 , ASN B:182 , GLY B:184 , ILE B:185 , GLY B:234 , ILE B:235 , ILE B:236 , TRP B:389 , TYR B:487 , LEU B:488 , GLN B:526 , 245 B:602 , HOH B:706 , HOH B:707 , HOH B:709 , HOH B:714 , HOH B:800	BINDING SITE FOR RESIDUE FAD B 601
07	AC7	SOFTWARE	ASP B:170 , VAL B:370 , TRP B:389 , ASN B:391 , LEU B:423 , LEU B:452 , TYR B:487 , FAD B:601	BINDING SITE FOR RESIDUE 245 B 602
08	AC8	SOFTWARE	TRP B:252 , THR B:359	BINDING SITE FOR RESIDUE DMS B 603
09	AC9	SOFTWARE	HIS B:430	BINDING SITE FOR RESIDUE DMS B 604
10	BC1	SOFTWARE	ARG B:238 , ARG B:240	BINDING SITE FOR RESIDUE DMS B 605
11	BC2	SOFTWARE	PRO B:518 , ARG B:530	BINDING SITE FOR RESIDUE DMS B 606
12	BC3	SOFTWARE	ARG B:72 , TRP B:145	BINDING SITE FOR RESIDUE DMS B 607

(no "SS Bond" information available for 4OAL)

(no "Cis Peptide Bond" information available for 4OAL)

(no "SAP(SNP)/Variant" information available for 4OAL)

(no "PROSITE Motif" information available for 4OAL)

(no "Exon" information available for 4OAL)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:444
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee.hhhhhhhhh............eeee..hhhhhhhhhhhhhhh.....eeee...............eeee.......eee....eeeeeee...hhhhhhhhhhhh..ee..........hhhhhhh......hhhhhhhhhh.eeeeeee.....eeeee...hhhhhhhhh.......eeeeeeeeeee...eeeeeeeee.hhhhhhhhhhhhhh......eeeeeee...eeeeeeeeee......hhhhhhhhhhhh........eeeeeehhhhhhhhhhhhhhhhhh.........eeeeee..hhhhhhhhhh.......eeeeeee.hhh............eeeeeee.......hhhhhhhhhhhhhhhhhhhhhh....eee.....hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4oal A  40 GGRLSVDASDIAEASRDFGGVARAEPMAVFHPRAAGDVAGLVGAAFRSARGFRVSARGHGHSISGQAQAAGGVVVDMSARALPVHSAALGGHYVDVWGGELWVDVLNWTLSHGGLAPRSWTDYLYLSVGGTLSNAGISGQAFHHGPQISNVYELDVVTGKGEVVTCSETENPDLFFGVLGGLGQFGIITRARIALERAPKRVRWIRALYSNFSEFTADQERLISLGRRFDYVEGFVVAAVLYCLEVTKNYDDETAGSVDQDVDTLLGELNFLPGTVFTTDLPYVDFLDRVHKAELKLRAKGMWEVPHPWLNLFVPASRIADFDRGVFRGVLGGPVLIYPMNKHKWDPRSSAVTPDEEVFYLVAFLRSALPGAPESLEALARQNQRILDFCAGTGIGAKQYLPGHKARHEWAEHFGAARWDRFARLKAEFDPRAILAAGQGIFRP 531
                                    49        59        69        79        89        99       109       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268     ||282       320       330       340       350       360       370       380       390       400       410 ||    427       437       447       457       467       477       487       497       507       517       527    
                                                                                                       117|                                                                                                                                                274|         291|                                                                                         412|                                                                                                               
                                                                                                        127                                                                                                                                                 279          320                                                                                          420

Chain B from PDB  Type:PROTEIN  Length:444
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee.hhhhhhhhh............eeee..hhhhhhhhhhhhhhh.....eeee...............eeee.......eee....eeeeeee...hhhhhhhhhhhh..ee..........hhhhhhh......hhhhhhhhhh.eeeeeee.....eeeee...hhhhhhhhh.......eeeeeeeeeee...eeeeeeeee.hhhhhhhhhhhhhh......eeeeeee...eeeeeeeeee......hhhhhhhhhhhh........eeeeeehhhhhhhhhhhhhhhhhh.........eeeeee..hhhhhhhhhh.......eeeeeee.hhh............eeeeeee.......hhhhhhhhhhhhhhhhhhhhhh....eee.....hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4oal B  40 GGRLSVDASDIAEASRDFGGVARAEPMAVFHPRAAGDVAGLVGAAFRSARGFRVSARGHGHSISGQAQAAGGVVVDMSARALPVHSAALGGHYVDVWGGELWVDVLNWTLSHGGLAPRSWTDYLYLSVGGTLSNAGISGQAFHHGPQISNVYELDVVTGKGEVVTCSETENPDLFFGVLGGLGQFGIITRARIALERAPKRVRWIRALYSNFSEFTADQERLISLGRRFDYVEGFVVAAVLYCLEVTKNYDDETAGSVDQDVDTLLGELNFLPGTVFTTDLPYVDFLDRVHKAELKLRAKGMWEVPHPWLNLFVPASRIADFDRGVFRGVLGGPVLIYPMNKHKWDPRSSAVTPDEEVFYLVAFLRSALPGAPESLEALARQNQRILDFCAGTGIGAKQYLPGHKARHEWAEHFGAARWDRFARLKAEFDPRAILAAGQGIFRP 531
                                    49        59        69        79        89        99       109       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268     ||282       320       330       340       350       360       370       380       390       400       410 ||    427       437       447       457       467       477       487       497       507       517       527    
                                                                                                       117|                                                                                                                                                274|         291|                                                                                         412|                                                                                                               
                                                                                                        127                                                                                                                                                 279          320                                                                                          420

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4OAL)

(no "CATH Domain" information available for 4OAL)

(no "Pfam Domain" information available for 4OAL)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4oal)

Biological Units
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	4oal
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	1.5.99.12
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UniProtKB/TrEMBL
	E3T1W8_MAIZE \| E3T1W8	:	4o95 5hhz 5hmr 5hqx

2qkn	THE SAME LIGAND (CPPU) IN COMPLEX WITH ZMCKO1
3kjm	THE SAME LIGAND (CPPU) IN COMPLEX WITH L491A MUTANT OF ZMCKO1
3s1c
3s1d
3s1e
3s1f
4ml8
4mla
4o95	THE SAME STRUCTURE IN DIFFERENT SPACEGROUP

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 12)

Sites (12, 12)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (0, 0)

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Gene Ontology (8, 8)

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