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(-) Description

Title :  STRUCTURE OF DOS1 PROPELLER
 
Authors :  C. Kuscu, T. Schalch, L. Joshua-Tor
Date :  02 Jan 14  (Deposition) - 22 Jan 14  (Release) - 26 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  B  (1x)
Biol. Unit 2:  A  (1x)
Keywords :  Propeller, Heterochromatin Formation, Rik1, Dos2, Transcription, Gene Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Kuscu, M. Zaratiegui, H. S. Kim, D. A. Wah, R. A. Martienssen, T. Schalch, L. Joshua-Tor
Crl4-Like Clr4 Complex In Schizosaccharomyces Pombe Depends On An Exposed Surface Of Dos1 For Heterochromatin Silencing
Proc. Natl. Acad. Sci. Usa V. 111 1795 2014
PubMed-ID: 24449894  |  Reference-DOI: 10.1073/PNAS.1313096111

(-) Compounds

Molecule 1 - RIK1-ASSOCIATED FACTOR 1
    Chains: B, A
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Strain: HI5
    Expression System Taxid: 7111
    Expression System Vector Type: PFL
    Fragment: DOS1WD
    Gene: RAF1, CLR8, CMC1, DOS1, SPCC613.12C
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 284812
    Strain: 972 / ATCC 24843
    Synonym: CRYPTIC LOCI REGULATOR 8, DE-LOCALIZATION OF SWI6 PROTEIN 1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x):  B
Biological Unit 2 (1x): A 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2EDO9Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO4Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (1, 5)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO5Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS B:254 , ILE B:274 , THR B:281 , MET B:328 , ILE B:632 , HOH B:903BINDING SITE FOR RESIDUE EDO B 701
02AC2SOFTWARELYS B:290 , ASP B:320 , HOH B:866BINDING SITE FOR RESIDUE EDO B 702
03AC3SOFTWAREILE A:569 , ASN A:584 , GLU A:587 , EDO A:704 , PHE B:581 , GLN B:583 , ASN B:584BINDING SITE FOR RESIDUE EDO B 703
04AC4SOFTWARESER A:378 , SER B:378 , ASN B:380BINDING SITE FOR RESIDUE EDO B 704
05AC5SOFTWAREASN B:440 , VAL B:480BINDING SITE FOR RESIDUE CL B 705
06AC6SOFTWAREASN A:249 , CYS A:252 , SER A:598 , GLU A:599 , ASP A:600 , HOH A:951BINDING SITE FOR RESIDUE EDO A 701
07AC7SOFTWARESER A:406 , ASP A:407 , HOH A:801BINDING SITE FOR RESIDUE EDO A 702
08AC8SOFTWARESER A:378 , ASN A:380 , LEU B:376 , THR B:377 , SER B:378BINDING SITE FOR RESIDUE EDO A 703
09AC9SOFTWARETHR A:586 , GLU A:587 , PHE B:581 , EDO B:703BINDING SITE FOR RESIDUE EDO A 704
10BC1SOFTWARELEU A:221 , MET A:222 , ASP A:223BINDING SITE FOR RESIDUE EDO A 705

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O9D)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly B:270 -Asn B:271

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O9D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O9D)

(-) Exons   (0, 0)

(no "Exon" information available for 4O9D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:391
                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh.eeeeee......eeeeee.....eeeeee.....eeeee....eeee....eee.....eee..eeeeee.....eeeeee....eeeee....eeeee......eeeeee.....eeeee....eeeeee......eeeeeee.hhhhhhh..eeeeeeeehhhhh...eeeeeeeehhhheeeeeeeeee....eeeee......eeeeeee.....eeeeeee....eeeeeee....eeeeeeee....eeeeee.....eeeeee...eeeeee........eeee...........eeee......eeee....eeeee.......eeeeeee....eeeeee.....eeeeee...eeeeee........ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o9d A 221 LMDGESVFFLKPWKHFNETSGDTVCVAYNPLCEKFALGSTAQGNLWIGDFHSETIQSLESHYKLNQVGEKEYSTISDLCFSKGNLFLYTGAFDNAVKVWDMEGNLCGIFNAPTDYIHKLALSDDDLLAVACKNGYGYLLSTDNSTGEILTSANLIYPEALEKGYSASLIEFSNFLGRSSDKVIIGYDSFHTSNNRGCLALFDASTASFVQKFNTADEAFTSLYMHPSQVGFVASSNTLSNGRVYYLDTRMYKVCLNFTTTQKDINHATISNSGILVTSSGTDNQTFVWDSRKPDKPLSLLKHGKTKMIAGINMAQWQPKGNLFVTGGSDGIVKVWDLRLNNPFIQNFTEMNSAITYGGFSEDASKLTVCCVGGDVNMYSLGNKFGEFRIIE 633
                                   230       240       250       260 ||    277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       548       558       568       578       588       598       608       618|      632 
                                                                   262|                                                                                                                                                                                                                                                                      535|                                                                    618|          
                                                                    270                                                                                                                                                                                                                                                                       547                                                                     623          


Chain B from PDB  Type:PROTEIN  Length:392
                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.eeeeee......eeeeee.....eeeeee............eeeee....eeee....eee.....eee..eeeeee.....eeeeee....eeeee....eeeee......eeeeee.....eeeee....eeeeee......eeeeeee.hhhhhhh..eeeeeeee........eeeeeee.......eeeeee....eeeee......eeeeeee.....eeeeeee....eeeeeee....eeeeeeee....eeeeee.....eeeeee...eeeeee........eeee..........eeee......eeee....eeeee.......eeeeeee....eeeeee.....eeeeee....eeeee.........eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o9d B 225 ESVFFLKPWKHFNETSGDTVCVAYNPLCEKFALGSTAQDGAYNRLGNLWIGDFHSETIQSLESHYKLNQVGEKEYSTISDLCFSKGNLFLYTGAFDNAVKVWDMEGNLCGIFNAPTDYIHKLALSDDDLLAVACKNGYGYLLSTDNSTGEILTSANLIYPEALEKGYSASLIEFSNFLGRSSDKVIIGYDSFHTNRGCLALFDASTASFVQKFNTADEAFTSLYMHPSQVGFVASSNTLSNGRVYYLDTRMYKVCLNFTTTQKDINHATISNSGILVTSSGTDNQTFVWDSRKPDKPLSLLKHGKTKMAGINMAQWQPKGNLFVTGGSDGIVKVWDLRLNNPFIQNFTEMNSAITYGGFSEDASKLTVCCVGGDVNMYSLGGNKFGEFRIIE 633
                                   234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414   ||  426       436       446       456       466       476       486       496       506       516       526       548       558       568       578       588       598       608       618||     631  
                                                                                                                                                                                                                           418|                                                                                                              534|                                                                     619|          
                                                                                                                                                                                                                            421                                                                                                               547                                                                      623
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O9D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O9D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O9D)

(-) Gene Ontology  (24, 24)

Asymmetric Unit(hide GO term definitions)

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