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(-) Description

Title :  O-ACETYLTRANSFERASE DOMAIN OF PSEUDOMONAS PUTIDA ALGJ
 
Authors :  T. Ricer, D. J. Little, J. C. Whitney, H. Robinson, P. L. Howell
Date :  30 Dec 13  (Deposition) - 01 Oct 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.81
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Sgnh Hydrolase-Like, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Baker, T. Ricer, P. J. Moynihan, E. N. Kitova, M. T. Walvoort, D. J. Little, J. C. Whitney, K. Dawson, J. T. Weadge, H. Robinson, D. E. Ohman, J. D. Codee, J. S. Klassen, A. J. Clarke, P. L. Howell
P. Aeruginosa Sgnh Hydrolase-Like Proteins Algj And Algx Have Similar Topology But Separate And Distinct Roles In Alginate Acetylation.
Plos Pathog. V. 10 04334 2014
PubMed-ID: 25165982  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1004334

(-) Compounds

Molecule 1 - ALGINATE BIOSYNTHESIS PROTEIN ALGJ
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A
    Expression System Strain: BL21 CODONPLUS(DE3)-RP
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ALGJ, PP_1279
    Organism Scientific: PSEUDOMONAS PUTIDA
    Organism Taxid: 160488
    Strain: KT2440

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4O8V)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O8V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4O8V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O8V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O8V)

(-) Exons   (0, 0)

(no "Exon" information available for 4O8V)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:278
                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.....eee.hhh....hhhhhhhhhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhh.....hhhhhhhhhhhhhhhhhh......hhhhhhhhh.............hhhhhhhhhhhhhhhhhhh.........eeeeeeeeeee.hhhhhhh.hhhhhhhh...eeeeeeeeee.....eeee.hhhhhhhhhhhhhhhhhhhh...ee.......hhhhhhhhhhhhhhhhh...eeeeeee.hhh.........hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o8v A  79 PGVVLGRDQWLFSDEEFKPTAGAEQLmQENLALIRGVRDTLQQHGSQLVLAIVPAKARVYTEYLGKERPASLHDDLYNQFHAQARQANVFAPDLmAPmEQAKARGQVFLRTDTHWTPmGAEVAAQALAEAVSRQSLLNGDPQAFITEAGNTAPYKGDLTNFLPDPLFSNLLPAPDNLQKRTTRPVDQIPVALVGTSYSANPHWNFLGALQQALRSDVANYAEDGHGPLLPmLKYLQSDAFKNAAPQVVVWEFPERYLPmKNDLSSFDPQWIAQLKNSR 370
                                    88        98      |108       118       128       138       148       158       168    |  178       188       198       208       218       228       238  ||   249       259     ||282       292       302       312       322|      332       342       352       362        
                                                    105-MSE                                                             173-MSE                196-MSE                                      241|                   265|                                         323-MSE                     351-MSE               
                                                                                                                           176-MSE                                                           243                    279                                                                                           


Chain B from PDB  Type:PROTEIN  Length:278
                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....eee.hhh....hhhhhhhhhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhh.....hhhhhhhhhhhhhhhhhh......hhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhh.........eeeeeeeeeee.hhhhhhh...hhhhh...eeeeeeeeee.....eeee.hhhhhhhhhhhhhhhhhhhh..eee.......hhhhhhhhhhhhhhhhh...eeeeeee.hhh.........hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o8v B  78 RPGVVLGRDQWLFSDEEFKPTAGAEQLmQENLALIRGVRDTLQQHGSQLVLAIVPAKARVYTEYLGKERPASLHDDLYNQFHAQARQANVFAPDLmAPmEQAKARGQVFLRTDTHWTPmGAEVAAQALAEAVSRQSLLNGDPQAFITEAGNTAPYKGDLTNFLPLDFSNLLPAPDNLQKRTTRPVDQIPVALVGTSYSANPHWNFLGALQQALRSDVANYAEDGHGPLLPmLKYLQSDAFKNAAPQVVVWEFPERYLPmKNDLSSFDPQWIAQLKNSR 370
                                    87        97       107       117       127       137       147       157       167     | 177       187       197       207       217       227       237     ||249       259     ||282       292       302       312       322|      332       342       352       362        
                                                     105-MSE                                                             173-MSE                196-MSE                                        243|                265|                                         323-MSE                     351-MSE               
                                                                                                                            176-MSE                                                             246                 279
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O8V)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (6, 6)

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