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(-) Description

Title :  THE CRYSTAL STRUCTURE OF ZEBRAFISH IL-22
 
Authors :  P. Siupka, O. J. Hamming, M. Fretaud, G. Luftalla, J. P. Levraud, R. Hart
Date :  21 Dec 13  (Deposition) - 10 Sep 14  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Il-22, Interleukin-22, Zil-22, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Siupka, O. J. Hamming, M. Fretaud, G. Luftalla, J. P. Levraud, R. Hartmann
The Crystal Structure Of Zebrafish Il-22 Reveals An Evolutionary, Conserved Structure Highly Similar To That Of Human Il-22.
Genes Immun. V. 15 293 2014
PubMed-ID: 24833303  |  Reference-DOI: 10.1038/GENE.2014.18

(-) Compounds

Molecule 1 - INTERLEUKIN 22
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 71-213
    Gene: IL22, IL-22
    Organism Common: LEOPARD DANIO,ZEBRA DANIO,ZEBRA FISH
    Organism Scientific: DANIO RERIO
    Organism Taxid: 7955
    Synonym: UNCHARACTERIZED PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4O6K)

(-) Sites  (0, 0)

(no "Site" information available for 4O6K)

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1A:48 -A:141
2A:49 -A:94
3B:48 -B:141
4B:49 -B:94
5C:48 -C:141
6C:49 -C:94
7D:48 -D:141
8D:49 -D:94

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asn D:25 -Glu D:26

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O6K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O6K)

(-) Exons   (0, 0)

(no "Exon" information available for 4O6K)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhh........hhhhhh..hhhhhhhhhhhhhhhh....hhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o6k A   1 GARPTPLDSSATWNDLAAMTDTARNETRLLPYFSHDMLQEEGSCCINARILKYYVNHVLEHTDMKYPMIRNVREGLHRVEQELQNHCKHDYSSHPLVKQFKRNYHASAIMDLAAARNKAIGETNTLYHYLFESCTP 143
                                    10        20     || 34        44        54        64|       77        87        97       107       117       127       137      
                                                    26|                               64|                                                                           
                                                     31                                68                                                                           


Chain B from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhh.........hhhhhh..hhhhhhhhhhhhhhhh....hhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o6k B   1 GARPTPLDSSATWNDLAAMTDTARNETRLLPYFSHDMLQEEGSCCINARILKYYVNHVLEHTDMKYPMIRNVREGLHRVEQELQNHCKHDYSSHPLVKQFKRNYHASAIMDLAAARNKAIGETNTLYHYLFESCTP 143
                                    10        20     || 34        44        54        64|       77        87        97       107       117       127       137      
                                                    26|                               64|                                                                           
                                                     31                                68                                                                           


Chain C from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhh.........hhhhhh..hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o6k C   1 GARPTPLDSSATWNDLAAMTDTARNETRLLPYFSHDMLQEEGSCCINARILKYYVNHVLETDMKYPMIRNVREGLHRVEQELQNHCKHDYSSHPLVKQFKRNYHASAIMDLAAARNKAIGETNTLYHYLFESCTP 143
                                    10        20     || 34        44        54        64|       78        88        98       108       118       128       138     
                                                    26|                               64|                                                                          
                                                     31                                69                                                                          


Chain D from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhh.........hhhhhh..hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o6k D   1 GARPTPLDSSATWNDLAAMTDTARNETRLLPYFSHDMLQEEGSCCINARILKYYVNHVLETDMKYPMIRNVREGLHRVEQELQNHCKHDYSSHPLVKQFKRNYHASAIMDLAAARNKAIGETNTLYHYLFESCTP 143
                                    10        20     || 34        44        54        64|       78        88        98       108       118       128       138     
                                                    26|                               64|                                                                          
                                                     31                                69
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O6K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O6K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O6K)

(-) Gene Ontology  (6, 6)

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  Cis Peptide Bonds
    Asn D:25 - Glu D:26   [ RasMol ]  
 
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