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(-) Description

Title :  DENGUE TYPE2 VIRUS NON-STRUCTURAL PROTEIN 1 (NS1) FORM 1 CRYSTAL
 
Authors :  D. L. Akey, J. L. Smith
Date :  20 Dec 13  (Deposition) - 19 Feb 14  (Release) - 12 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Flavivirus, Non-Structural Protein 1, Ns1, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. L. Akey, W. C. Brown, S. Dutta, J. Konwerski, J. Jose, T. J. Jurkiw, J. Delproposto, C. M. Ogata, G. Skiniotis, R. J. Kuhn, J. L. Smith
Flavivirus Ns1 Structures Reveal Surfaces For Associations With Membranes And The Immune System.
Science V. 343 881 2014
PubMed-ID: 24505133  |  Reference-DOI: 10.1126/SCIENCE.1247749

(-) Compounds

Molecule 1 - NON-STRUCTURAL PROTEIN 1
    Chains: A, B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PH-OP64-7
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Gene: NS1
    Organism Common: DENV-2
    Organism Scientific: DENGUE VIRUS 2
    Organism Taxid: 31634
    Strain: THAILAND/16681/1984
    Synonym: NS1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:207 , ASP A:208BINDING SITE FOR RESIDUE NAG A 401
2AC2SOFTWAREASN B:207BINDING SITE FOR RESIDUE NAG B 401

(-) SS Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1A:4 -A:15
2A:55 -A:143
3A:179 -A:223
4A:280 -A:329
5A:291 -A:312
6A:313 -A:316
7B:4 -B:15
8B:55 -B:143
9B:179 -B:223
10B:280 -B:329
11B:291 -B:312
12B:313 -B:316

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Leu A:318 -Pro A:319
2Leu B:318 -Pro B:319

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O6B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O6B)

(-) Exons   (0, 0)

(no "Exon" information available for 4O6B)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...eeeeeeeeee...........ee..hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh....eeee.....ee.............eeee........hhhhh....eeeee..eeeee.............eeeee..eeeee...eeeeeee...eeeeeeee..ee......................hhhhh..................hhhhh.eeeee......eeee..........ee..........eeee.......eeee....eee...eee...hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o6b A   0 ADSGCVVSKELKCGSGIFITDNVHTWTEQYKFQPESPSKLASAIQKAHEEGICGIRSVTRLENLMWKQITPELNHILSENEVKLTIMTGDIKGIMQAGKRSLRPQHNQTFLIDGPETAECPNTNRAWNSLEVEDYNIWLKLKEKQDVFCDSKLMSAAIKDNRAVHADMGYWIESALNDTWKIEKASFIEVKNCHWPKSHTLWSNGVLESEMIIPKNLAGPVSQHNYRPGYHTQITGPWHLGKLEMDFDFCDGTTVVVTEDCGNRGPSLRTTTASGKLITEWCCRSCTLPPLRYRGEDGCWYGMEIRPLKEKEENLVNSL 349
                                   |12        22        32        42        52        62        72        82        92       102    || 133       143       153    || 170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340         
                                   7|                                                                                             107|                          158|                                                                                                                                                                                       
                                   11                                                                                              129                           166                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:323
                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeeeeeee.........eee...hhhhhhhhhhhhhhhh..ee...hhhhhhhhhhhhhhhhhhhhhh....eeee.....ee..........eeee........hhh.ee...ee........eee..ee........hhhhheeeee..eeeee...eeeeeee...eeeeeeee..ee......................hhhhh........................eeeee......eeee......................eeee.......eeee....eee....ee...hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o6b B   1 DSGCVVSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSKLASAIQKAHEEGICGIRSVTRLENLMWKQITPELNHILSENEVKLTIMTGDIKGIMQAGKRSLRPQTFLIDGPETAECPNTNRAWNSLEVEDYGFGTTNIWLKLKEKQDVFCDSKLMSAAIKDNRAVHADMGYWIESALNDTWKIEKASFIEVKNCHWPKSHTLWSNGVLESEMIIPKNLAGPVSQHNYRPGYHTQITGPWHLGKLEMDFDFCDGTTVVVTEDCGNRGPSLRTTTASGKLITEWCCRSCTLPPLRYRGEDGCWYGMEIRPLKEKEENLVNSL 349
                                    10        20        30        40        50        60        70        80        90       100     ||134       144       154      |166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346   
                                                                                                                                   106|                           161|                                                                                                                                                                                         
                                                                                                                                    131                            164
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O6B)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O6B)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O6B)

(-) Gene Ontology  (62, 62)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        POLG_DEN26 | P29990: 2r69

(-) Related Entries Specified in the PDB File

4o6c 4o6d