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(-) Description

Title :  CRYSTAL STRUCTURE OF THE TRBD DOMAIN OF TERT AND THE CR4/5 OF TR
 
Authors :  J. Huang, J. Wu, M. Lei
Date :  16 Dec 13  (Deposition) - 07 May 14  (Release) - 18 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,E,F
Biol. Unit 1:  A,E  (1x)
Biol. Unit 2:  B,F  (1x)
Keywords :  Telomerase, Telomerase Rna, Protein-Rna Interaction, Rna Binding Protein-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Huang, A. F. Brown, J. Wu, J. Xue, C. J. Bley, D. P. Rand, L. Wu, R. Zhang J. J. Chen, M. Lei
Structural Basis For Protein-Rna Recognition In Telomerase.
Nat. Struct. Mol. Biol. V. 21 507 2014
PubMed-ID: 24793650  |  Reference-DOI: 10.1038/NSMB.2819

(-) Compounds

Molecule 1 - TELOMERASE REVERSE TRANSCRIPTASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: SCARABXPRESS T7LAC
    Expression System Taxid: 562
    Fragment: TRBD (UNP RESIDUES 318-572)
    Gene: TERT
    Organism Common: JAPANESE RICE FISH
    Organism Scientific: ORYZIAS LATIPES
    Organism Taxid: 8090
    Synonym: TERT
 
Molecule 2 - TELOMERASE TR
    Chains: E, F
    Engineered: YES
    Fragment: CR4/5
    Organism Scientific: ORYZIAS LATIPES
    Organism Taxid: 8090
    Other Details: RNA WAS PREPARED BY IN VITRO TRANSCRIPTION WITH T7 RNA POLYMERASE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABEF
Biological Unit 1 (1x): A E 
Biological Unit 2 (1x):  B F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1SO412Ligand/IonSULFATE ION
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1SO48Ligand/IonSULFATE ION
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:343 , GLN A:387 , ARG A:390BINDING SITE FOR RESIDUE SO4 A 601
02AC2SOFTWAREARG A:384 , ARG A:388 , PRO A:441 , GLU A:442 , GLU A:443BINDING SITE FOR RESIDUE SO4 A 602
03AC3SOFTWAREVAL A:405 , PRO A:420 , GLN A:421 , HIS A:422 , HIS A:426 , ARG A:427 , LEU A:430BINDING SITE FOR RESIDUE SO4 A 603
04AC4SOFTWAREARG A:324 , HIS A:327 , PHE A:556 , LYS B:466 , ARG B:469BINDING SITE FOR RESIDUE SO4 A 604
05AC5SOFTWAREHIS A:559 , LYS A:562BINDING SITE FOR RESIDUE SO4 A 605
06AC6SOFTWAREARG A:393 , TYR A:394 , SER A:395BINDING SITE FOR RESIDUE SO4 A 606
07AC7SOFTWARETYR A:429 , ARG A:433 , ARG A:459 , ARG B:324 , SER B:549 , GLN B:552BINDING SITE FOR RESIDUE SO4 A 607
08AC8SOFTWAREMET A:326 , SER A:395 , SER A:549 , ASP A:553BINDING SITE FOR RESIDUE SO4 A 608
09AC9SOFTWARESER A:408 , ARG A:409 , ARG B:557 , HIS B:559 , HOH B:703BINDING SITE FOR RESIDUE SO4 B 601
10BC1SOFTWAREHIS B:559 , ILE B:560 , ALA B:561 , LYS B:562BINDING SITE FOR RESIDUE SO4 B 602
11BC2SOFTWAREHIS B:399 , PRO B:403 , VAL B:404 , ARG B:544BINDING SITE FOR RESIDUE SO4 B 603
12BC3SOFTWARECYS B:392 , ARG B:393 , TYR B:394 , SER B:395BINDING SITE FOR RESIDUE SO4 B 604

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:402 -A:423
2B:402 -B:423

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4O26)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O26)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O26)

(-) Exons   (0, 0)

(no "Exon" information available for 4O26)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........hhhhhhhh.ee......ee.hhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee...eeee.hhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4o26 A 316 GSGFLYGGRGMHGFCLNRKRRTAAGPRRLQGQDLVRLVFFEGLKPKKLPLRYFNMVPVFGRLLQRHRKCRYSSVLHRMCPVVELSRAAQGELSSLIPQHCAPHRVYLFVRECLTAVVPEELWGSDHNRLQFFSRVRGFLKSGSVAELMWKIKVMDCDWLKLRRTAGRFPPSELAYRTRILSQFLTWLLDGFVVGLVRACFYATESNAIRFYRQEVWSKLQDLAFRRHIAKGEMEELSPAQ 572
                                   325       335       345       355  ||   373       383       393       403       413       423       433       443       453       463 ||    478       488       498       508       518       528    || 542       552       562       572
                                                                    358|                                                                                               465|                                                           533|                                  
                                                                     367                                                                                                471                                                            538                                  


Chain B from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhh...........hhhhhhhhhhh....hhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.............hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee.......eeeehhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4o26 B 317 SGFLYGGRGMHGFCLNRKRRTAAGPRRLQGQDLVRLVFFEKKLPLRYFNMVPVFGRLLQRHRKCRYSSVLHRMCPVVELSRAAQGELSSLIPQHCAPHRVYLFVRECLTAVVPEELWGSDHNRLQFFSRVRGFLKSGKFERISVELMWKIKVMDCDWLKLPPSELAYRTRILSQFLTWLLDGFVVGLVRACFYATESVGQKNAIRFYRQEVWSKLQDLAFRRHIAKGE 564
                                   326       336       346       356|      378       388       398       408       418       428       438       448       458       468   ||  479       489|      506       516       526       536       546       556        
                                                                 356|                                                                                                    472|            489|                                                                   
                                                                  369                                                                                                     474             497                                                                   


Chain E from PDB  Type:RNA  Length:47
                                                                               
                 4o26 E 170 GGAACGCCGCGGUCAGCUCGGCUGCUGCGAAGAGUCUCUGUUGUUCC 220
                                   179       189       199    || 213       
                                                            204|           
                                                             209           


Chain F from PDB  Type:RNA  Length:47
                                                                               
                 4o26 F 170 GGAACGCCGCGGUCAGCUCGGCUGCUGCGAAGAGUCUCUGUUGUUCC 220
                                   179       189       199    || 213       
                                                            204|           
                                                             209
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O26)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O26)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O26)

(-) Gene Ontology  (14, 14)

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