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(-) Description

Title :  CRYSTAL STRUCTURE OF OVINE CYCLOOXYGENASE-1 COMPLEX WITH MELOXICAM
 
Authors :  S. Xu, D. J. Hermanson, S. Banerjee, K. Ghebreselasie, G. M. Clayton, R. M. Garavito, L. J. Marnett
Date :  16 Dec 13  (Deposition) - 22 Jan 14  (Release) - 14 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dioxygenase, Peroxidase, Nsaids, Glycosylation, Membrane, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Xu, D. J. Hermanson, S. Banerjee, K. Ghebreselasie, G. M. Clayton, R. M. Garavito, L. J. Marnett
Oxicams Bind In A Novel Mode To The Cyclooxygenase Active Site Via A Two-Water-Mediated H-Bonding Network.
J. Biol. Chem. V. 289 6799 2014
PubMed-ID: 24425867  |  Reference-DOI: 10.1074/JBC.M113.517987

(-) Compounds

Molecule 1 - PROSTAGLANDIN G/H SYNTHASE 1
    Chains: A, B
    EC Number: 1.14.99.1
    Fragment: UNP RESIDUES 32-600
    Organism Common: DOMESTIC SHEEP,LAMBS,WILD SHEEP
    Organism Scientific: OVIS ARIES
    Organism Taxid: 9940
    Synonym: CYCLOOXYGENASE-1, COX-1, PROSTAGLANDIN H2 SYNTHASE 1, PGH SYNTHASE 1, PGHS-1, PHS 1, PROSTAGLANDIN-ENDOPEROXIDE SYNTHASE 1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric/Biological Unit (3, 14)
No.NameCountTypeFull Name
1HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2MXM2Ligand/Ion4-HYDROXY-2-METHYL-N-(5-METHYL-1,3-THIAZOL-2-YL)-2H-1,2-BENZOTHIAZINE-3-CARBOXAMIDE 1,1-DIOXIDE
3NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:199 , GLN A:203 , HIS A:207 , PHE A:210 , LYS A:211 , THR A:212 , LEU A:295 , ASN A:382 , TYR A:385 , HIS A:386 , HIS A:388 , MET A:391 , ILE A:444 , VAL A:447 , ASP A:450BINDING SITE FOR RESIDUE HEM A 801
02AC2SOFTWAREMET A:113 , VAL A:116 , LEU A:117 , ARG A:120 , ILE A:345 , VAL A:349 , LEU A:352 , LEU A:359 , TRP A:387 , PHE A:518 , MET A:522 , ILE A:523 , GLY A:526 , ALA A:527 , SER A:530 , LEU A:531 , HOH A:1017 , HOH A:1061BINDING SITE FOR RESIDUE MXM A 807
03AC3SOFTWAREGLN B:203 , HIS B:207 , PHE B:210 , LYS B:211 , THR B:212 , LEU B:295 , ASN B:382 , TYR B:385 , HIS B:386 , HIS B:388 , MET B:391 , ASP B:450BINDING SITE FOR RESIDUE HEM B 801
04AC4SOFTWAREMET B:113 , VAL B:116 , LEU B:117 , ILE B:345 , VAL B:349 , LEU B:359 , TRP B:387 , PHE B:518 , MET B:522 , GLY B:526 , ALA B:527 , SER B:530 , LEU B:531 , HOH B:1051 , HOH B:1052BINDING SITE FOR RESIDUE MXM B 807
05AC5SOFTWAREPRO A:40 , TYR A:55 , ASN A:68 , ASP A:584 , HOH A:956BINDING SITE FOR MONO-SACCHARIDE NAG A 802 BOUND TO ASN A 68
06AC6SOFTWAREGLU A:140 , ASN A:144 , TYR A:147 , MET A:216 , HOH A:918 , HOH A:1013 , HOH A:1022 , HOH A:1029 , HOH A:1031 , HOH A:1042 , HOH A:1044 , LEU B:238BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 144 RESIDUES 803 TO 804
07AC7SOFTWAREGLN A:400 , TYR A:402 , GLN A:406 , ASN A:410 , MET A:413 , ASP A:416 , HOH A:1052BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 410 RESIDUES 805 TO 806
08AC8SOFTWAREPRO B:40 , TYR B:55 , ASN B:68BINDING SITE FOR MONO-SACCHARIDE NAG B 802 BOUND TO ASN B 68
09AC9SOFTWAREGLU A:239 , GLU B:140 , ASN B:144 , TYR B:147 , HOH B:944 , HOH B:963 , HOH B:1003 , HOH B:1038BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 144 RESIDUES 803 TO 804
10BC1SOFTWAREGLN B:400 , TYR B:402 , GLN B:406 , ASN B:410 , MET B:413 , ASP B:416BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 410 RESIDUES 805 TO 806

(-) SS Bonds  (10, 10)

Asymmetric/Biological Unit
No.Residues
1A:36 -A:47
2A:37 -A:159
3A:41 -A:57
4A:59 -A:69
5A:569 -A:575
6B:36 -B:47
7B:37 -B:159
8B:41 -B:57
9B:59 -B:69
10B:569 -B:575

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:126 -Pro A:127
2Ser B:126 -Pro B:127

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O1Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O1Z)

(-) Exons   (0, 0)

(no "Exon" information available for 4O1Z)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:553
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh......eeeee...eeeee.....ee.....eehhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhh..hhhhhhhhhhhhhhhh...............hhhhhhh............................hhhhhhhhhh............hhhhhhhhhhhhh......................hhhhhh.hhhhhhhhh.........eee..eee.................hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhh..........hhhhhhhh.hhhhh...eee..eeehhhhhh...hhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhh...hhhhhhhhh......hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o1z A  32 PVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEIWTWLRTTLRPSPSFIHFLLTHGRWLWDFVNATFIRDTLMRLVLTVRSNLIPSPPTYNIAHDYISWESFSNVSYYTRILPSVPRDCPTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTHQFFKTSGKMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLFGAQFQYRNRIAMEFNQLYHWHPLMPDSFRVGPQDYSYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYWKASTFGGEVGFNLVKTATLKKLVCLNTKTCPYVSFHVPD 584
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581   


Chain B from PDB  Type:PROTEIN  Length:553
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh......eeeee...eeeee.....ee.....eehhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhh...............hhhhhhh............................hhhhhhhhhh............hhhhhhhhhhhhh......................hhhhhh.hhhhhhhhh.........eee..eee............................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhh..........hhhhhhhhhhhhhh...eee..eeehhhhhh...hhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhh...hhhhhhhhh......hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.hhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o1z B  32 PVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEIWTWLRTTLRPSPSFIHFLLTHGRWLWDFVNATFIRDTLMRLVLTVRSNLIPSPPTYNIAHDYISWESFSNVSYYTRILPSVPRDCPTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTHQFFKTSGKMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLFGAQFQYRNRIAMEFNQLYHWHPLMPDSFRVGPQDYSYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYWKASTFGGEVGFNLVKTATLKKLVCLNTKTCPYVSFHVPD 584
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O1Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O1Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O1Z)

(-) Gene Ontology  (25, 25)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ser A:126 - Pro A:127   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PGH1_SHEEP | P05979: 1cqe 1diy 1djj 1ebv 1eqg 1eqh 1fe2 1ht5 1ht8 1igx 1igz 1pge 1pgf 1pgg 1prh 1pth 1q4g 1u67 2ayl 2oye 2oyu 3kk6 3n8v 3n8w 3n8x 3n8y 3n8z

(-) Related Entries Specified in the PDB File

1diy 1q4g 4m11