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(-) Description

Title :  CRYSTAL STRUCTURE OF T. ELONGATUS BP-1 CLOCK PROTEIN KAIC
 
Authors :  R. Pattanayek, M. Egli
Date :  13 Dec 13  (Deposition) - 14 May 14  (Release) - 14 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.84
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (2x)
Keywords :  Auto-Kinase, Atp Synthase, Atpase, Circadian Clock, Kaib, Kaic, Kinase, Circadian Clock Molecule, Atp Binding, Sasa, Phosphorylation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Pattanayek, Y. Xu, A. Lamichhane, C. H. Johnson, M. Egli
An Arginine Tetrad As Mediator Of Input-Dependent And Input-Independent Atpases In The Clock Protein Kaic
Acta Crystallogr. , Sect. D V. D70 1375 2014
PubMed: search

(-) Compounds

Molecule 1 - CIRCADIAN CLOCK PROTEIN KINASE KAIC
    Chains: A, B, C
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET VECTOR
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: KAIC, TLR0483
    Mutation: YES
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS
    Organism Taxid: 197221
    Strain: BP-1

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 18)

Asymmetric Unit (4, 18)
No.NameCountTypeFull Name
1ATP6Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG6Ligand/IonMAGNESIUM ION
3SEP3Mod. Amino AcidPHOSPHOSERINE
4TPO3Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 1 (3, 24)
No.NameCountTypeFull Name
1ATP12Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3SEP6Mod. Amino AcidPHOSPHOSERINE
4TPO6Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:295 , GLU A:319 , ATP A:802BINDING SITE FOR RESIDUE MG A 801
02AC2SOFTWARETHR A:290 , GLY A:291 , THR A:292 , GLY A:293 , LYS A:294 , THR A:295 , LEU A:296 , GLU A:318 , TRP A:331 , ARG A:451 , ILE A:472 , MG A:801 , LYS B:457 , MET B:458 , ARG B:459 , SER B:461 , TRP B:462 , HIS B:463BINDING SITE FOR RESIDUE ATP A 802
03AC3SOFTWAREGLY A:50 , THR A:51 , GLY A:52 , LYS A:53 , THR A:54 , LEU A:55 , SER A:90 , PHE A:91 , ILE A:240 , MG A:804 , LYS B:225 , LEU B:226 , ARG B:227 , THR B:229 , THR B:230 , HIS B:231 , LYS B:233BINDING SITE FOR RESIDUE ATP A 803
04AC4SOFTWARETHR A:54 , GLU A:79 , ASP A:146 , ATP A:803BINDING SITE FOR RESIDUE MG A 804
05AC5SOFTWARETHR B:295 , GLU B:318 , GLU B:319 , ATP B:602BINDING SITE FOR RESIDUE MG B 601
06AC6SOFTWARETHR B:290 , GLY B:291 , THR B:292 , GLY B:293 , LYS B:294 , THR B:295 , LEU B:296 , GLU B:318 , TRP B:331 , THR B:415 , ARG B:451 , ILE B:472 , MG B:601 , LYS C:457 , MET C:458 , ARG C:459 , SER C:461 , TRP C:462 , HIS C:463BINDING SITE FOR RESIDUE ATP B 602
07AC7SOFTWARETHR B:54 , GLU B:79 , ATP B:604BINDING SITE FOR RESIDUE MG B 603
08AC8SOFTWARESER B:49 , GLY B:50 , THR B:51 , GLY B:52 , LYS B:53 , THR B:54 , LEU B:55 , SER B:90 , PHE B:91 , ARG B:219 , ILE B:240 , MG B:603 , PHE C:200 , LYS C:225 , LEU C:226 , ARG C:227 , THR C:229 , THR C:230 , HIS C:231BINDING SITE FOR RESIDUE ATP B 604
09AC9SOFTWARETHR C:295 , ATP C:602BINDING SITE FOR RESIDUE MG C 601
10BC1SOFTWARELYS A:457 , MET A:458 , ARG A:459 , SER A:461 , HIS A:463 , THR C:290 , GLY C:291 , THR C:292 , GLY C:293 , LYS C:294 , THR C:295 , LEU C:296 , TRP C:331 , THR C:415 , ARG C:451 , ILE C:472 , MG C:601 , HOH C:704BINDING SITE FOR RESIDUE ATP C 602
11BC2SOFTWAREPHE A:200 , LYS A:225 , ARG A:227 , THR A:229 , THR A:230 , HIS A:231 , HOH A:950 , SER C:49 , GLY C:50 , THR C:51 , GLY C:52 , LYS C:53 , THR C:54 , LEU C:55 , SER C:90 , PHE C:91 , ARG C:219 , ILE C:240 , MG C:604BINDING SITE FOR RESIDUE ATP C 603
12BC3SOFTWARETHR C:54 , ASP C:146 , ATP C:603BINDING SITE FOR RESIDUE MG C 604

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O0M)

(-) Cis Peptide Bonds  (11, 11)

Asymmetric Unit
No.Residues
1Thr A:12 -Glu A:13
2Ser A:15 -Ser A:16
3Gly A:115 -Gln A:116
4Gln A:116 -Glu A:117
5Glu A:117 -Val A:118
6Ala A:126 -Leu A:127
7Val A:499 -Asp A:500
8Ala B:119 -Gly B:120
9Ser B:498 -Val B:499
10Asp B:500 -Glu B:501
11Ser C:15 -Ser C:16

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O0M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O0M)

(-) Exons   (0, 0)

(no "Exon" information available for 4O0M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:494
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........ee.....hhhhhh...ee...eeeeee....hhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhh..hhhhhhh..eeeee..................hhhhhhhhhhhhh..eeeee.hhhhh....hhhhhhhhhhhhhhhhhhh..eeeeeee............hhhhhh.eeeeeeee......eeeeeeeee........eeeeee...eee...............ee...hhhhhhhh...ee...eeeeee....hhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhh...hhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhhhhh..eeeee.........hhhhhhhhhhhhhhhhhhh..eeeeeee....................eeeeeeeeee..eeeeeeeeeee.........eeeeee..eeeeeee...ee.......ee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o0m A  11 PTEQSSAEVKKIPTMIEGFDDISHGGLPQGRTTLVSGTSGTGKTLFAVQFLYNGITIFNEPGIFVTFEESPQDIIKNALSFGWNLQSLIDQGKLFILDASPDPDGQEVAGDFDLSALIERIQYAIRKYKATRVSIDSVTAVFQQYDAASVVRREIFRLAFRLKQLGVTTIMTTERVDEYGPVARFGVEEFVSDNVVILRNVLEGERRRRTVEILKLRGTTHMKGEYPFTINNGINIFPLGAMRLTQRSSNVRVSSGVKTLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLETGCQQGERALLFAYEESRAQLSRNASSWGIDFEELERRGLLRIICAYPESAGLEDHLQIIKSEIADFKPSRVAIDSLSALARGVSNNAFRQFVIGVTGFAKQEEITGFFTNTTDQFMGSNSITESHIstITDTILLLQYVEIRGEMSRAINVFKMRGSWHDKGIREYVITEKGAEIRDSFRNFEGIISGTPTRISVDEKTE 504
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430||     440       450       460       470       480       490       500    
                                                                                                                                                                                                                                                                                                                                                                                                                                                              431-SEP                                                                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                               432-TPO                                                                    


Chain B from PDB  Type:PROTEIN  Length:490
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........ee.....hhhhhh...ee...eeeeee....hhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhh.hhhhhhh...eeeee.................hhhhhhhhhhhhh...eeeee.hhhhhh...hhhhhhhhhhhhhhhhhhh..eeeeeee............hhhhhh.eeeeeeee......eeeeeeeee.........eeeee...eee...............ee...hhhhhhhh...ee...eeeeee....hhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhh...hhhhhhhh..eee...hhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhh..hhhhhhhhhhhhhhhhhhh..eeeeeee....................eeeeeeeeee..eeeeeeeeeee.........eeeeee..eeeeeee...ee.......ee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o0m B  12 TEQSSAEVKKIPTMIEGFDDISHGGLPQGRTTLVSGTSGTGKTLFAVQFLYNGITIFNEPGIFVTFEESPQDIIKNALSFGWNLQSLIDQGKLFILDASPDPDGQEVAGDFDLSALIERIQYAIRKYKATRVSIDSVTAVFQQYDAASVVRREIFRLAFRLKQLGVTTIMTTERVDEYGPVARFGVEEFVSDNVVILRNVLEGERRRRTVEILKLRGTTHMKGEYPFTINNGINIFPLGAMRLTQRSSNVRVSSGVKTLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLETGCQQGERALLFAYEESRAQLSRNASSWGIDFEELERRGLLRIICAYPESAGLEDHLQIIKSEIADFKPSRVAIDSLSALARGVSNNAFRQFVIGVTGFAKQEEITGFFTNTTDQFMGSNSITESHIstITDTILLLQYVEIRGEMSRAINVFKMRGSWHDKGIREYVITEKGAEIRDSFRNFEGIISGTPTRISVDE 501
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431|      441       451       461       471       481       491       501
                                                                                                                                                                                                                                                                                                                                                                                                                                                             431-SEP                                                                  
                                                                                                                                                                                                                                                                                                                                                                                                                                                              432-TPO                                                                 


Chain C from PDB  Type:PROTEIN  Length:490
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........ee.....hhhhhh...ee...eeeeee....hhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhh....hhhhhhhh..eeeee........hhhhh....hhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhhhh..eeeeeee............hhhhhh.eeeeeeee......eeeeeeeee........eeeeee...eee...............ee...hhhhhhhh...ee...eeeeee....hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhh....hhhhhhh..eee...hhhhhhhhhhhhhhhhhhhhhh..eeee..........hhhhhhhhhhhhhhhhhhh..eeeeeee..............hhhhh.eeeeeeeeee..eeeeeeeeeee.........eeeeee..eeeeeee...ee.......ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o0m C  11 PTEQSSAEVKKIPTMIEGFDDISHGGLPQGRTTLVSGTSGTGKTLFAVQFLYNGITIFNEPGIFVTFEESPQDIIKNALSFGWNLQSLIDQGKLFILDASPDPDGQEVAGDFDLSALIERIQYAIRKYKATRVSIDSVTAVFQQYDAASVVRREIFRLAFRLKQLGVTTIMTTERVDEYGPVARFGVEEFVSDNVVILRNVLEGERRRRTVEILKLRGTTHMKGEYPFTINNGINIFPLGAMRLTQRSSNVRVSSGVKTLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLETGCQQGERALLFAYEESRAQLSRNASSWGIDFEELERRGLLRIICAYPESAGLEDHLQIIKSEIADFKPSRVAIDSLSALARGVSNNAFRQFVIGVTGFAKQEEITGFFTNTTDQFMGSNSITESHIstITDTILLLQYVEIRGEMSRAINVFKMRGSWHDKGIREYVITEKGAEIRDSFRNFEGIISGTPTRISVD 500
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430||     440       450       460       470       480       490       500
                                                                                                                                                                                                                                                                                                                                                                                                                                                              431-SEP                                                                 
                                                                                                                                                                                                                                                                                                                                                                                                                                                               432-TPO
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O0M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O0M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O0M)

(-) Gene Ontology  (18, 18)

Asymmetric Unit(hide GO term definitions)

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  4o0m
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  KAIC_THEEB | Q79V60
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KAIC_THEEB | Q79V60: 1suy 1sv1 5jwo 5jwq 5jwr

(-) Related Entries Specified in the PDB File

3dvl CLOCK PROTEIN KAIC, S. ELONGATUS