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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HUMAN L-ASPARAGINASE PROTEIN T186V MUTANT
 
Authors :  J. Nomme, A. Lavie
Date :  13 Dec 13  (Deposition) - 30 Apr 14  (Release) - 18 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.71
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ntn Enzyme, Homodimer, Asparaginase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Nomme, Y. Su, A. Lavie
Elucidation Of The Specific Function Of The Conserved Threonine Triad Responsible For Human L-Asparaginase Autocleavage And Substrate Hydrolysis.
J. Mol. Biol. V. 426 2471 2014
PubMed-ID: 24768817  |  Reference-DOI: 10.1016/J.JMB.2014.04.016

(-) Compounds

Molecule 1 - ISOASPARTYL PEPTIDASE/L-ASPARAGINASE
    Chains: A, B
    EC Number: 3.4.19.5, 3.5.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET14B
    Expression System Strain: BL21(DE3) C41
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ASRGL1, ALP, CRASH
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ASPARAGINASE-LIKE PROTEIN 1, BETA-ASPARTYL-PEPTIDASE, ISOASPARTYL DIPEPTIDASE, L-ASPARAGINE AMIDOHYDROLASE, ISOASPARTYL PEPTIDASE/L-ASPARAGINASE ALPHA CHAIN, ISOASPARTYL PEPTIDASE/L- ASPARAGINASE BETA CHAIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1NA2Ligand/IonSODIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:55 , GLU A:56 , ASP A:58 , PHE A:61 , ALA A:63 , CYS A:65BINDING SITE FOR RESIDUE NA A 401
2AC2SOFTWARELEU B:55 , GLU B:56 , ASP B:58 , PHE B:61 , ALA B:63 , CYS B:65BINDING SITE FOR RESIDUE NA B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O0E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4O0E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O0E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O0E)

(-) Exons   (0, 0)

(no "Exon" information available for 4O0E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.......hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..................eeeeeee.....eeeeeee....hhhhhhhhhhhhh...eeehhhhhhhhhhh...........hhhhhhhhhhhhh...eeeeee.....eeeeeee....................eeee...eeeeeeehhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..eeeeeee....eeeee......eeeee..eeeee......eeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o0e A   0 HMNPIVVVHGGGAGPISKDRKERVHQGMVRAATVGYGILREGGSAVDAVEGAVVALEDDPEFNAGCGSVLNTNGEVEMDASIMDGKDLSAGAVSAVQCIANPIKLARLVMEKTPHCFLTDQGAAQFAAAMGVPEIPGEKLVTERNKKRLEKEKHLGTVGAVALDCKGNVAYATSVGGIVNKMVGRVGDSPCLGAGGYADNDIGAVSTTGHGESILKVNLARLTLFHIEQGKTVEEAADLSLGYMKSRVKGLGGLIVVSKTGDWVAKWTSTSMPWAAAKDGKLHFGIDPDDTTITDLP 308
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149   ||  171       181       191       201       211       221       231       241       251       261       271       281       291       301       
                                                                                                                                                                                   153|                                                                                                                                              
                                                                                                                                                                                    166                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.......hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..................eeeeeee.....eeeeeee....hhhhhhhhhhhhh....eehhhhhhhhhhh.....hhhhhh..hhhhhhhhhh....eeeeee.....eeeeeee....................eeee...eeeee..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh...eeeeee....eeeee......eeeee..eeeee......eeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o0e B   0 HMNPIVVVHGGGAGPISKDRKERVHQGMVRAATVGYGILREGGSAVDAVEGAVVALEDDPEFNAGCGSVLNTNGEVEMDASIMDGKDLSAGAVSAVQCIANPIKLARLVMEKTPHCFLTDQGAAQFAAAMGVPEIPGEKLVTERNKKRLEKEKHLGTVGAVALDCKGNVAYATSVGGIVNKMVGRVGDSPCLGAGGYADNDIGAVSTTGHGESILKVNLARLTLFHIEQGKTVEEAADLSLGYMKSRVKGLGGLIVVSKTGDWVAKWTSTSMPWAAAKDGKLHFGIDPDDTTITDLP 308
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149   ||  171       181       191       201       211       221       231       241       251       261       271       281       291       301       
                                                                                                                                                                                   153|                                                                                                                                              
                                                                                                                                                                                    166
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O0E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O0E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O0E)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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  4o0e
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  ASGL1_HUMAN | Q7L266
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ASGL1_HUMAN | Q7L266: 3tkj 4et0 4o0c 4o0d 4o0f 4o0g 4o0h 4osx 4osy 4pvp 4pvq 4pvr 4pvs 4zm9

(-) Related Entries Specified in the PDB File

4o0c 4o0d 4o0f 4o0g 4o0h