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(-) Description

Title :  THE EFFECTS OF LYSINE 200 AND PHENYLALANINE 239 FARNESYL PYROPHOSPHATE SYNTHASE (FPPS) MUTATIONS ON THE CATALYTIC ACTIVITY, CRYSTAL STRUCTURE AND INHIBITION BY NITROGEN CONTAINING BISPHOSPHONATES
 
Authors :  M. K. Tsoumpra, B. L. Barnett, J. R. C. Muniz, R. L. Walter, F. H. Ebetino, Delft, R. G. G. Russell, U. Oppermann, J. E. Dunford
Date :  03 Dec 13  (Deposition) - 19 Nov 14  (Release) - 19 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.43
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Cholesterol Synthesis, Alpha-Helical Prenyltransferase Fold, Transferase, Isoprene Synthesis, Lipid Synthesis, Steroid Biosynthesis, Isoprenoid Pathway, Dimethylallyl Pyrophosphate, Isopentenyl Pyrophosphate (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. K. Tsoumpra, B. L. Barnett, J. R. C. Muniz, R. L. Walter, F. H. Ebetino F. Von Delft, R. G. G. Russell, U. Oppermann, J. E. Dunford
The Effects Of Lysine 200 And Phenylalanine 239 Farnesyl Pyrophosphate Synthase (Fpps) Mutations On The Catalytic Activity, Crystal Structure And Inhibition By Nitrogen Containing Bisphosphonates
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FARNESYL PYROPHOSPHATE SYNTHASE
    Chains: A
    EC Number: 2.5.1.10, 2.5.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 11 DERIVATIVE
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 67-419
    Gene: FDPS, FPS, KIAA1293
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FPP SYNTHASE, FPS, (2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, DIMETHYLALLYLTRANSTRANSFERASE, FARNESYL DIPHOSPHATE SYNTHASE, GERANYLTRANSTRANSFERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric Unit (4, 11)
No.NameCountTypeFull Name
1EDO6Ligand/Ion1,2-ETHANEDIOL
2MG3Ligand/IonMAGNESIUM ION
3PO41Ligand/IonPHOSPHATE ION
4RIS1Ligand/Ion1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID
Biological Unit 1 (3, 16)
No.NameCountTypeFull Name
1EDO12Ligand/Ion1,2-ETHANEDIOL
2MG-1Ligand/IonMAGNESIUM ION
3PO42Ligand/IonPHOSPHATE ION
4RIS2Ligand/Ion1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:103 , ASP A:107 , ARG A:112 , GLN A:171 , LYS A:200 , THR A:201 , GLN A:240 , ASP A:243 , LYS A:257 , MG A:902 , MG A:903 , MG A:904 , HOH A:1243 , HOH A:1244 , HOH A:1245 , HOH A:1334 , HOH A:1335 , HOH A:1336 , HOH A:1337 , HOH A:1338 , HOH A:1339 , HOH A:1341BINDING SITE FOR RESIDUE RIS A 901
02AC2SOFTWAREASP A:103 , ASP A:107 , RIS A:901 , MG A:904 , HOH A:1337 , HOH A:1338BINDING SITE FOR RESIDUE MG A 902
03AC3SOFTWAREASP A:243 , RIS A:901 , HOH A:1334 , HOH A:1335 , HOH A:1336BINDING SITE FOR RESIDUE MG A 903
04AC4SOFTWAREASP A:103 , ASP A:107 , RIS A:901 , MG A:902 , HOH A:1339 , HOH A:1340 , HOH A:1341BINDING SITE FOR RESIDUE MG A 904
05AC5SOFTWARELEU A:71 , ILE A:219 , HOH A:1333BINDING SITE FOR RESIDUE EDO A 905
06AC6SOFTWAREGLU A:37 , LYS A:191 , ARG A:192 , SER A:195 , HOH A:1174BINDING SITE FOR RESIDUE EDO A 906
07AC7SOFTWAREGLN A:242 , PHE A:314 , LEU A:315 , GLU A:318 , HOH A:1379BINDING SITE FOR RESIDUE EDO A 907
08AC8SOFTWAREARG A:141 , LYS A:144 , LEU A:161 , GLN A:162 , HOH A:1028 , HOH A:1261BINDING SITE FOR RESIDUE EDO A 908
09AC9SOFTWAREPHE A:99 , ALA A:102 , ILE A:129 , ASN A:130 , ASN A:133 , HOH A:1040BINDING SITE FOR RESIDUE EDO A 909
10BC1SOFTWAREGLU A:234 , GLU A:237 , PHE A:238 , TYR A:317 , SER A:321 , ILE A:325 , HOH A:1112BINDING SITE FOR RESIDUE EDO A 910
11BC2SOFTWAREGLY A:56 , LYS A:57 , GLN A:96 , ARG A:113 , HOH A:1002 , HOH A:1014 , HOH A:1039 , HOH A:1061 , HOH A:1169 , HOH A:1214BINDING SITE FOR RESIDUE PO4 A 911

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NUA)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:334 -Pro A:335

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NUA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NUA)

(-) Exons   (0, 0)

(no "Exon" information available for 4NUA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:338
                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee.hhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nua A   9 AYAQEKQDFVQHFSQIVRVLTEHPEIGDAIARLKEVLEYNTIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFAQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYK 350
                                    18        28 ||     42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342        
                                                30|                                                                                                                                                                                                                                                                                                                           
                                                 35
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NUA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NUA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NUA)

(-) Gene Ontology  (17, 17)

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  4nua
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  FPPS_HUMAN | P14324
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  2.5.1.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FPPS_HUMAN | P14324: 1yq7 1yv5 1zw5 2f7m 2f89 2f8c 2f8z 2f92 2f94 2f9k 2opm 2opn 2qis 2rah 2vf6 3b7l 3cp6 3n1v 3n1w 3n3l 3n45 3n46 3n49 3n5h 3n5j 3n6k 3rye 3s4j 4dem 4ga3 4h5c 4h5d 4h5e 4jvj 4kfa 4kpd 4kpj 4kq5 4kqs 4kqu 4l2x 4lfv 4lpg 4lph 4n1z 4n9u 4nfi 4nfj 4nfk 4ng6 4nke 4nkf 4ogu 4p0v 4p0w 4p0x 4pvx 4pvy 4q23 4qpf 4qxs 4rxa 4xqr 4xqs 4xqt 5cg5 5cg6 5dgm 5dgn 5dgs 5diq 5djp 5djr 5djv 5ja0 5juz 5jv0 5jv1 5jv2 5ksx

(-) Related Entries Specified in the PDB File

1yq7 FARNESYL PYROPHOPGHATE SYNTHASE NATIVE WITH SAME LIGAND
4n9u
4ng6
4nke
4nkf