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(-) Description

Title :  APO STRUCTURE OF OBCA
 
Authors :  J. T. Oh, E. Goo, I. Hwang, S. Rhee
Date :  17 Nov 13  (Deposition) - 19 Mar 14  (Release) - 07 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha/Beta Barrel Protein, Oxlate Biosynthase, Methylation, Seleno- Met Labeling, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Oh, E. Goo, I. Hwang, S. Rhee
Structural Basis For Bacterial Quorum Sensing-Mediated Oxalogenesis.
J. Biol. Chem. V. 289 11465 2014
PubMed-ID: 24616091  |  Reference-DOI: 10.1074/JBC.M113.543462

(-) Compounds

Molecule 1 - OBCA, OXALATE BIOSYNTHETIC COMPONENT A
    Chains: A
    EC Number: 4.1.3.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: BGLU_2G18790
    Organism Scientific: BURKHOLDERIA GLUMAE
    Organism Taxid: 626418
    Strain: BGR1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric/Biological Unit (3, 12)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2MLY5Mod. Amino AcidN-DIMETHYL-LYSINE
3MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:222 , HIS A:224 , GLU A:473 , HOH A:901 , HOH A:1033 , HOH A:1084BINDING SITE FOR RESIDUE MG A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NNA)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:369 -Pro A:370

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NNA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NNA)

(-) Exons   (0, 0)

(no "Exon" information available for 4NNA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:498
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee.......ee.......eeehhhhhhhhhhhhhhhhhhhhhhh..eee....eeeee.....................eehhhhhh..hhhhhhhhhhhhhhh..ee.....ee.....eeeeehhhhhhhhhhhhhhhhhhhhhh..ee...eee.....ee.....hhhhhhhhhhhhhhhh..eeee..ee....eeeee...eeeee...ee..hhhhhhhhhhhhhhhh...eeee......hhhhh..hhhhhh...hhhhh....eeee.....ee........hhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhh..hhhhhhhh...eeeeee....eeee......eee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeee......eee.......eee..hhhhhhhhhhhhhhhh.....hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4nna A   2 TSLYITAAPIGAVPkFLDPFEATFIPSFLLEGFFDADRCASIAADLKTDGWEVVPAGGRLLQVGHAQPIRWTRHPPRLAAPNAAHFPkPWLAALSNKLARRIVLQLTTYGWIVSEQGDLLWEHERQHHYLPPALIEAIEKESPALLKNmEEAGWIACAAGYWQAGKARSPYLPITPEAITEETIRSmRAGAAVVHLHTRDLSDRRRIEIPGLGVVTVGSQRNQIVLDDYDAIVPmVkKREPAAILNLSTSVRGDRHGARSKLRRAHLkFYDDVGSAPEVASLSPAAVVFQGGGGYDNAPDFLDAQFDHFERVGTRPEVEVFNHAIVDNATSLYRDRLLRTGKPVLFmLVAGVDQYRRDPITGEVEDDSLIARVVREEISSLLADESADSHRRAVELAIGQLRPVVERLRASFPVSKISILLPGPmQNLLVDVALGLGLDGIRVGLEDGLTVNDARVPGGVRkARGTWEQVSLVREELLGRGATILTAAQVRDmFGLGI 525
                                    11    |   21        31        41        51        61        92  ||   107       117       127       137       147       157       167       177       187       197       207      |217       227       237       247       257    | |267       277       287       297       307       317       327       337       347       357       367      |377       387       397       407       417       427       437       447    |  457       467       477       487 |     497       507       517  |     
                                         16-MLY                                                70| 95|           115-MLY                                                      176-MSE                               214-MSE                                         262-MSE                          295-MLY                                                                        374-MSE                                                                       452-MSE                              489-MLY                        520-MSE 
                                                                                                92 101                                                                                                                                                                264-MLY
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NNA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NNA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NNA)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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    Lys A:369 - Pro A:370   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        C5AJX5_BURGB | C5AJX5: 4nnb 4nnc

(-) Related Entries Specified in the PDB File

4nnb 4nnc