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(-) Description

Title :  PROTEIN CRYSTAL STRUCTURE OF HUMAN BORJESON-FORSSMAN-LEHMANN SYNDROME ASSOCIATED PROTEIN PHF6
 
Authors :  Z. Liu, F. Li, J. Zhang, Y. Mei, J. Wu, Y. Shi
Date :  16 Nov 13  (Deposition) - 26 Feb 14  (Release) - 03 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.47
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Zinc Finger, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Liu, F. Li, J. Zhang, Y. Mei, J. Wu, Y. Shi
Crystal Structure Of The Second Extended Phd Domain Of Huma Phf6 Protein
J. Biol. Chem. 2014
PubMed: search

(-) Compounds

Molecule 1 - PHD FINGER PROTEIN 6
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX4T-1
    Expression System Strain: ROSETTA
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 208-333
    Gene: PHF6, KIAA1823
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PHD-LIKE ZINC FINGER PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric Unit (2, 7)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2ZN6Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2ZN-1Ligand/IonZINC ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:212 , CYS A:215 , HIS A:239 , CYS A:242BINDING SITE FOR RESIDUE ZN A 401
2AC2SOFTWARECYS A:280 , CYS A:283 , HIS A:302 , CYS A:305BINDING SITE FOR RESIDUE ZN A 402
3AC3SOFTWARECYS A:292 , CYS A:297 , CYS A:326 , HIS A:329BINDING SITE FOR RESIDUE ZN A 403
4AC4SOFTWARECYS B:212 , CYS B:215 , HIS B:239 , CYS B:242BINDING SITE FOR RESIDUE ZN B 401
5AC5SOFTWARECYS B:280 , CYS B:283 , HIS B:302 , CYS B:305BINDING SITE FOR RESIDUE ZN B 402
6AC6SOFTWARECYS B:292 , CYS B:297 , CYS B:326 , HIS B:329BINDING SITE FOR RESIDUE ZN B 403
7AC7SOFTWAREHIS A:229 , ILE A:230 , PHE A:231 , ILE A:265 , HOH A:511 , PHE B:260 , GLY B:261 , ASP B:262 , PHE B:263BINDING SITE FOR RESIDUE GOL B 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NN2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NN2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NN2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NN2)

(-) Exons   (0, 0)

(no "Exon" information available for 4NN2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhh.eee......eeehhhhhh..................hhhhhhhhhhhhh.............ee........eehhhhhhhh..eeeee....eeeeehhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nn2 A 208 TRPKCGFCHVGEEENEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSG 331
                                   217       227       237       247       257       267       277       287       297       307       317       327    


Chain B from PDB  Type:PROTEIN  Length:118
                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhh.eee......eeehhhhhhh.............hhhhhhhhhhhhh.............ee........eehhhhhhhh..eeeeehhhheeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 4nn2 B 209 RPKCGFCHVGEEENEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHS 330
                                   218       228       238       248      |262       272       282       292       302       312       322        
                                                                        255|                                                                      
                                                                         260
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NN2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NN2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NN2)

(-) Gene Ontology  (20, 20)

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        PHF6_HUMAN | Q8IWS0: 4r7a

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