Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)

(-) Description

Title :  STRUCTURAL AND KINETIC BASES FOR THE METAL PREFERENCE OF THE M18 AMINOPEPTIDASE FROM PSEUDOMONAS AERUGINOSA
 
Authors :  D. D. Nguyen, R. Pandian, D. Y. Kim, S. C. Ha, K. H. Yun, K. S. Kim, J. H. Kim,
Date :  11 Nov 13  (Deposition) - 02 Apr 14  (Release) - 17 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (3x)
Keywords :  Metallopeptidase, Aspartyl Aminopeptidase, Cobalt Complex, Tetrahedral Shape Dodecameric Structure, Metal Binding, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. D. Nguyen, R. Pandian, D. Kim, S. C. Ha, H. J. Yoon, K. S. Kim, K. H. Yun, J. H. Kim, K. K. Kim
Structural And Kinetic Bases For The Metal Preference Of Th M18 Aminopeptidase From Pseudomonas Aeruginosa
Biochem. Biophys. Res. Commun. V. 447 101 2014
PubMed-ID: 24704201  |  Reference-DOI: 10.1016/J.BBRC.2014.03.109

(-) Compounds

Molecule 1 - PROBABLE M18 FAMILY AMINOPEPTIDASE 2
    Chains: A, B, C, D
    EC Number: 3.4.11.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PVFT1S
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: APEB, PA3247
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (3x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric Unit (3, 15)
No.NameCountTypeFull Name
2CO8Ligand/IonCOBALT (II) ION
1CO34Ligand/IonCARBONATE ION
3NHE3Ligand/Ion2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
Biological Unit 1 (2, 21)
No.NameCountTypeFull Name
2CO-1Ligand/IonCOBALT (II) ION
1CO312Ligand/IonCARBONATE ION
3NHE9Ligand/Ion2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:82 , ASP A:236 , ASP A:307 , CO A:502 , CO3 A:503BINDING SITE FOR RESIDUE CO A 501
02AC2SOFTWAREASP A:236 , GLU A:266 , HIS A:401 , CO A:501 , CO3 A:503BINDING SITE FOR RESIDUE CO A 502
03AC3SOFTWAREASP A:236 , GLU A:266 , ASP A:307 , HIS A:401 , CO A:501 , CO A:502 , HIS D:156BINDING SITE FOR RESIDUE CO3 A 503
04AC4SOFTWAREARG A:41 , GLU A:137 , ARG A:139BINDING SITE FOR RESIDUE NHE A 504
05AC5SOFTWAREHIS B:82 , ASP B:236 , ASP B:307 , CO B:502 , CO3 B:503BINDING SITE FOR RESIDUE CO B 501
06AC6SOFTWAREASP B:236 , GLU B:266 , HIS B:401 , CO B:501 , CO3 B:503BINDING SITE FOR RESIDUE CO B 502
07AC7SOFTWAREHIS B:82 , ASP B:236 , GLU B:265 , GLU B:266 , ASP B:307 , MET B:400 , HIS B:401 , CO B:501 , CO B:502 , HIS C:156BINDING SITE FOR RESIDUE CO3 B 503
08AC8SOFTWAREHIS C:82 , ASP C:236 , ASP C:307 , CO C:502 , CO3 C:503BINDING SITE FOR RESIDUE CO C 501
09AC9SOFTWAREASP C:236 , GLU C:266 , HIS C:401 , CO C:501 , CO3 C:503BINDING SITE FOR RESIDUE CO C 502
10BC1SOFTWAREHIS B:156 , HIS C:82 , GLU C:265 , GLU C:266 , ASP C:307 , ARG C:341 , MET C:400 , HIS C:401 , CO C:501 , CO C:502 , HOH C:624BINDING SITE FOR RESIDUE CO3 C 503
11BC2SOFTWAREGLU C:137 , ARG C:139 , HOH C:604 , HOH C:610 , SER D:426BINDING SITE FOR RESIDUE NHE C 504
12BC3SOFTWAREASP D:236 , GLU D:266 , HIS D:401 , CO D:502 , CO3 D:503BINDING SITE FOR RESIDUE CO D 501
13BC4SOFTWAREHIS D:82 , ASP D:236 , ASP D:307 , CO D:501 , CO3 D:503BINDING SITE FOR RESIDUE CO D 502
14BC5SOFTWAREHIS A:156 , ASP D:236 , ASP D:307 , MET D:400 , HIS D:401 , CO D:501 , CO D:502BINDING SITE FOR RESIDUE CO3 D 503
15BC6SOFTWAREGLU D:137 , ARG D:139 , HOH D:603BINDING SITE FOR RESIDUE NHE D 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NJQ)

(-) Cis Peptide Bonds  (13, 13)

Asymmetric Unit
No.Residues
1Arg A:2 -Ala A:3
2Gly A:49 -Gly A:50
3Ala A:181 -Pro A:182
4Pro A:182 -Gly A:183
5Asp A:236 -Asn A:237
6Met A:400 -His A:401
7Pro B:182 -Gly B:183
8Asp B:236 -Asn B:237
9Asp C:236 -Asn C:237
10Asn D:133 -Gly D:134
11Gly D:183 -Glu D:184
12Asp D:236 -Asn D:237
13Ala D:383 -Ser D:384

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NJQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NJQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4NJQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:407
                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..eee............eeeeee...eeeeee....hhhhhh.eeeeee....eeeeeeeeeeee..eeeeeeeee....hhhhh...eeeeeeeeeee..eeeeeeee...........hhhhh.hhhhh...hhhhhh..eeee.......hhhhhhhhhhhhhhh....eeeeeeeeeee....eee.....eeee.hhhhhhhhhhhhhhhhh......eeeeee......hhhhhhhhhh...hhhhhhhh..eeeee..ee..hhhhhhhhhhhhh.......eee.........hhhhhhhhhhhhhhh....eee...........eeeee.ee.......eeee.hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4njq A   1 MRAELNQGLIDFLKASPTPFHATASLARRLEAAGYRRLDERDAWHTETGGRYYVTRNDSSLIAIRLGRRSPLESGFRLVGAHTDSPCLRVKPNPEIARNGFLQLGVEVYGGALFAPWFDRDLSLAGRVTFRANGKLESRLVDFRKAIAVIPNLAIHLNRAANEGWPINAQNELPPIIAQLAPGEAADFRLLLDEQLLREHGITADVVLDYELSFYDTQSAAVVGLNDEFIAGARLDNLLSCHAGLEALLNAEGDENCILVCTDHEEVPFLEQVLRRLLPEGDAFSRAIQRSLLVSADNAHGVHPNYADRHDANHGPALNGGPVIKINSNQRYATNSETAGFFRHLCQDSEVPVQSFVTRSDMQVGVRTVDIGLPTFAMHSIRELAGSHDLAHLVKVLGAFYASSELP 429
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      |280       290       300       310       320       330       340       350       360       370 ||    392       402       412       422       
                                                                                                                                                                                                                                                                                                    267|                                                                                           372|                                            
                                                                                                                                                                                                                                                                                                     278                                                                                            385                                            


Chain B from PDB  Type:PROTEIN  Length:410
                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..eee............eeeeee...eeeeee....hhhhhheeeeeee....eeeeeeeeeeee..eeeeeeeee....hhhhh...eeeeeeeeeee..eeeeeeee...........hhhhh.hhhhh...hhhhhh..eeee.......hhhhhhhhhhhhhhh....eeeeeeeeeee....eee.....eeee.hhhhhhhhhhhhhhhhhh....eeeeeee......hhhhhhhh.....hhhhhhhh..eeeee..ee.....hhhhh............eee.........hhhhhhhhhhhhhhh....eee..............eeeee.eee......eeee.hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4njq B   1 MRAELNQGLIDFLKASPTPFHATASLARRLEAAGYRRLDERDAWHTETGGRYYVTRNDSSLIAIRLGRRSPLESGFRLVGAHTDSPCLRVKPNPEIARNGFLQLGVEVYGGALFAPWFDRDLSLAGRVTFRANGKLESRLVDFRKAIAVIPNLAIHLNRAANEGWPINAQNELPPIIAQLAPGEAADFRLLLDEQLLREHGITADVVLDYELSFYDTQSAAVVGLNDEFIAGARLDNLLSCHAGLEALLNAEGDENCILVCTDHEEVPFLEQVLRRLLPEGDAFSRAIQRSLLVSADNAHGVHPNYADRHDANHGPALNGGPVIKINSNQRYATNSETAGFFRHLCQDSEVPVQSFVTRSDMTASQVGVRTVDIGLPTFAMHSIRELAGSHDLAHLVKVLGAFYASSELP 429
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      |280       290       300       310       320       330       340       350       360       370 ||    389       399       409       419       429
                                                                                                                                                                                                                                                                                                    267|                                                                                           372|                                               
                                                                                                                                                                                                                                                                                                     278                                                                                            382                                               


Chain C from PDB  Type:PROTEIN  Length:407
                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..ee.............eeeeee...eeeeee....hhhhhh.eeeeee....eeeeeeeeeeee..eeeeeeeee....hhhhh...eeeeeeeeee.....eeeeee...........hhhhh.hhhhh...hhhhhh..eeee.......hhhhhhhhhhhhhhh....eeeeeeeeeee....eee.....eeee.hhhhhhhhhhhhhhhhhh.....eeeeee......hhhhhhhh...hhhhhhhhhh..eeeee..ee.....hhhhh............eee.........hhhhhhhhhhhhhh.....eee...........eeeee.eee......eeee.hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4njq C   1 MRAELNQGLIDFLKASPTPFHATASLARRLEAAGYRRLDERDAWHTETGGRYYVTRNDSSLIAIRLGRRSPLESGFRLVGAHTDSPCLRVKPNPEIARNGFLQLGVEVYGGALFAPWFDRDLSLAGRVTFRANGKLESRLVDFRKAIAVIPNLAIHLNRAANEGWPINAQNELPPIIAQLAPGEAADFRLLLDEQLLREHGITADVVLDYELSFYDTQSAAVVGLNDEFIAGARLDNLLSCHAGLEALLNAEGDENCILVCTDHEEVPFLEQVLRRLLPEGDAFSRAIQRSLLVSADNAHGVHPNYADRHDANHGPALNGGPVIKINSNQRYATNSETAGFFRHLCQDSEVPVQSFVTRSDMQVGVRTVDIGLPTFAMHSIRELAGSHDLAHLVKVLGAFYASSELP 429
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      |280       290       300       310       320       330       340       350       360       370 ||    392       402       412       422       
                                                                                                                                                                                                                                                                                                    267|                                                                                           372|                                            
                                                                                                                                                                                                                                                                                                     278                                                                                            385                                            


Chain D from PDB  Type:PROTEIN  Length:409
                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..eee............eeeeee...eeeeee....hhhhhheeeeeee....eeeeeeeeeeee..eeeeeeeee....hhhhh...eeeeeeeeeee..eeeeeeee...........hhhhh.hhhhh...hhhhhh..eeee.......hhhhhhhhhhhhhhh....eeeeeeeeeee....eee.....eeee.hhhhhhhhhhhhhhhhhh....eeeeeee......hhhhhhhhh....hhhhhhhh..eeeee..ee.....hhhhh............eee.........hhhhhhhhhhhhhhh....eee.............eeeee.eee......eeee.hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4njq D   1 MRAELNQGLIDFLKASPTPFHATASLARRLEAAGYRRLDERDAWHTETGGRYYVTRNDSSLIAIRLGRRSPLESGFRLVGAHTDSPCLRVKPNPEIARNGFLQLGVEVYGGALFAPWFDRDLSLAGRVTFRANGKLESRLVDFRKAIAVIPNLAIHLNRAANEGWPINAQNELPPIIAQLAPGEAADFRLLLDEQLLREHGITADVVLDYELSFYDTQSAAVVGLNDEFIAGARLDNLLSCHAGLEALLNAEGDENCILVCTDHEEVPFLEQVLRRLLPEGDAFSRAIQRSLLVSADNAHGVHPNYADRHDANHGPALNGGPVIKINSNQRYATNSETAGFFRHLCQDSEVPVQSFVTRSDMASQVGVRTVDIGLPTFAMHSIRELAGSHDLAHLVKVLGAFYASSELP 429
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      |280       290       300       310       320       330       340       350       360       370 ||    390       400       410       420         
                                                                                                                                                                                                                                                                                                    267|                                                                                           372|                                              
                                                                                                                                                                                                                                                                                                     278                                                                                            383
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NJQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NJQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NJQ)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CO3  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NHE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala A:181 - Pro A:182   [ RasMol ]  
    Ala D:383 - Ser D:384   [ RasMol ]  
    Arg A:2 - Ala A:3   [ RasMol ]  
    Asn D:133 - Gly D:134   [ RasMol ]  
    Asp A:236 - Asn A:237   [ RasMol ]  
    Asp B:236 - Asn B:237   [ RasMol ]  
    Asp C:236 - Asn C:237   [ RasMol ]  
    Asp D:236 - Asn D:237   [ RasMol ]  
    Gly A:49 - Gly A:50   [ RasMol ]  
    Gly D:183 - Glu D:184   [ RasMol ]  
    Met A:400 - His A:401   [ RasMol ]  
    Pro A:182 - Gly A:183   [ RasMol ]  
    Pro B:182 - Gly B:183   [ RasMol ]  
 
Biological Unit
  Complete Structure
    Biological Unit 1  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4njq
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  APEB_PSEAE | Q9HYZ3
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  3.4.11.-
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  APEB_PSEAE | Q9HYZ3
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        APEB_PSEAE | Q9HYZ3: 2ijz 3wt4 4njr 4oid 4oiw

(-) Related Entries Specified in the PDB File

4njr ZNZNPAAP ASPARTYL AMINO PEPTIDASE OF PSEUDOMONAS AERUGINOSA WITH ZINC IN CATALYTIC SITE
4oid D236A MUTATION FROM ASPARTYL AMINO PEPTIDASE OF PSEUDOMONAS AERUGINOSA 4OID
4oiw