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(-) Description

Title :  CRYSTAL STRUCTURE OF KLEBSIELLA PNEUMONIAE RSTA DNA-BINDING DOMAIN IN COMPLEX WITH RSTA BOX
 
Authors :  Y. C. Li, C. D. Hsiao
Date :  05 Nov 13  (Deposition) - 16 Jul 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Two-Component System, Response Regulator, Transcription Regulator-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. C. Li, C. K. Chang, C. F. Chang, Y. H. Cheng, P. J. Fang, T. Yu, S. C. Chen Y. C. Li, C. D. Hsiao, T. H. Huang
Structural Dynamics Of The Two-Component Response Regulator Rsta In Recognition Of Promoter Dna Element.
Nucleic Acids Res. V. 42 8777 2014
PubMed-ID: 24990372  |  Reference-DOI: 10.1093/NAR/GKU572

(-) Compounds

Molecule 1 - DNA-BINDING TRANSCRIPTIONAL REGULATOR RSTA
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 131-239
    Gene: RSTA, KPN2242_10390, KPR_2822
    Mutation: YES
    Organism Scientific: KLEBSIELLA PNEUMONIAE
    Organism Taxid: 573
    Synonym: RSTA PROTEIN
 
Molecule 2 - 5'-D(*GP*GP*TP*TP*GP*TP*AP*CP*AP*TP*TP*CP*CP*GP*TP*TP*AP*CP *TP*CP*CP*CP*T)-3'
    Chains: C
    Engineered: YES
    Other Details: RSTA BOX LEADING STRAND
    Synthetic: YES
 
Molecule 3 - 5'-D(*CP*AP*GP*GP*GP*AP*GP*TP*AP*AP*CP*GP*GP*AP*AP*TP*GP*TP *AP*CP*AP*AP*C)-3'
    Chains: D
    Engineered: YES
    Other Details: RSTA BOX LAGGING STRAND
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4NHJ)

(-) Sites  (0, 0)

(no "Site" information available for 4NHJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NHJ)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Gly A:155 -Gly A:156
2Gly A:196 -Met A:197
3Arg B:190 -Gly B:191

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NHJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NHJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4NHJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:102
                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eee..eeee....eeee..eee..hhhhhhhhhhhhh.....eehhhhhhhhh........hhhhhhhhhhhhhh.........eeee...eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4nhj A 134 PHKTISFGSLTIDPVNRQVMLGGENVALSTADFDMLWELATHAGQIMDRDALLKNLRGVTYDGMDRSVDVAISRLRKKLLDNATEPYRIKTVRNKGYLFAPH 235
                                   143       153       163       173       183       193       203       213       223       233  


Chain B from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eeee....eeee..eee..hhhhhhhhhhhhhh...eeehhhhhhhhh........hhhhhhhhhhhhhh.........eeee...eeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 4nhj B 135 HKTISFGSLTIDPVNRQVMLGGENVALSTADFDMLWELATHAGQIMDRDALLKNLRGVTYDGMDRSVDVAISRLRKKLLDNATEPYRIKTVRNKGYLFAPH 235
                                   144       154       164       174       184       194       204       214       224       234 


Chain C from PDB  Type:DNA  Length:22
                                                      
                 4nhj C   2 GTTGTACATTCCGTTACTCCCT  23
                                    11        21  


Chain D from PDB  Type:DNA  Length:23
                                                       
                 4nhj D   1 CAGGGAGTAACGGAATGTACAAC  23
                                    10        20
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NHJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NHJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NHJ)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg B:190 - Gly B:191   [ RasMol ]  
    Gly A:155 - Gly A:156   [ RasMol ]  
    Gly A:196 - Met A:197   [ RasMol ]  
 

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(-) Related Entries Specified in the PDB File

4nic