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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF THE 16MER GCAGACUUAAGUCUGC
 
Authors :  P. A. Beal, A. J. Fisher, K. J. Phelps, J. M. Ibarra-Soza, Y. Zheng
Date :  31 Oct 13  (Deposition) - 02 Jul 14  (Release) - 03 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.96
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Rna 16Mer Oligo, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. J. Phelps, J. M. Ibarra-Soza, K. Tran, A. J. Fisher, P. A. Beal
Click Modification Of Rna At Adenosine: Structure And Reactivity Of 7-Ethynyl- And 7-Triazolyl-8-Aza-7-Deazaadenosine In Rna.
Acs Chem. Biol. V. 9 1780 2014
PubMed-ID: 24896732  |  Reference-DOI: 10.1021/CB500270X

(-) Compounds

Molecule 1 - GCAGACUUAAGUCUGC
    ChainsA, B, C
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit ABC
Biological Unit 1 (2x)A  
Biological Unit 2 (1x) BC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SPM1Ligand/IonSPERMINE
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1SPM-1Ligand/IonSPERMINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SPM1Ligand/IonSPERMINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREG A:4 , C A:13 , U A:14 , G B:4 , U B:12 , C B:13 , A C:5 , U C:12 , C C:13BINDING SITE FOR RESIDUE SPM C 101

(-) SS Bonds  (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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Chain A from PDB  Type:RNA  Length:16
                                               
                  4nfo A  1 GCAGACUUAAGUCUGC 16
                                    10      

Chain B from PDB  Type:RNA  Length:16
                                               
                  4nfo B  1 GCAGACUUAAGUCUGC 16
                                    10      

Chain C from PDB  Type:RNA  Length:16
                                               
                  4nfo C  1 GCAGACUUAAGUCUGC 16
                                    10      

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(-) Gene Ontology  (0, 0)

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(-) Related Entries Specified in the PDB File

4nfp 4nfq