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(-) Description

Title :  CRYSTAL STRUCTURE OF AN ENGINEERED PROTEIN WITH FERREDOXIN FOLD, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET OR277
 
Authors :  R. Guan, Y. -R. Lin, N. Koga, R. Koga, J. Castellanos, J. Seetharaman, M. S. Sahdev, L. Mao, R. Xiao, J. K. Everett, D. Baker, G. T. Montelione, No Structural Genomics Consortium (Nesg)
Date :  30 Oct 13  (Deposition) - 15 Jan 14  (Release) - 15 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.32
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi-Biology, Ferredoxin Fold, Protein Engineering, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Guan, Y. -R. Lin, N. Koga, R. Koga, J. Castellanos, J. Seetharaman, M. Maglaqui, S. Sahdev, L. Mao, R. Xiao, J. K. Everett, D. Baker, G. T. Montelione
Northeast Structural Genomics Consortium Target Or277
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ENGINEERED PROTEIN OR277
    Chains: A, B
    Engineered: YES
    Organism Scientific: ARTIFICIAL GENE
    Organism Taxid: 32630
    Other Details: THIS IS A DESIGNED PROTEIN.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric/Biological Unit (3, 20)
No.NameCountTypeFull Name
14NE1Ligand/IonTETRABUTYLPHOSPHONIUM
2MSE18Mod. Amino AcidSELENOMETHIONINE
3TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:158 , HOH A:363 , HOH A:369 , GLU B:74BINDING SITE FOR RESIDUE TRS A 201
2AC2SOFTWAREGLU A:35 , TRP A:37 , TRP A:121 , GLU B:35 , TRP B:37 , MSE B:128BINDING SITE FOR RESIDUE 4NE B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NEY)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gly A:79 -Ser A:80
2Gly A:85 -Ser A:86
3Gly A:164 -Ser A:165
4Arg B:78 -Gly B:79

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NEY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NEY)

(-) Exons   (0, 0)

(no "Exon" information available for 4NEY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..hhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeeee..hhhhhhhhhhhhhhhhhhhh.eeeeeee........eeeeeee..hhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeeee..hhhhhhhhhhhhhhhhhhhh.eeeeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ney A   1 mGEmmIIFEGDDLEALEKALKEmIRQARKFAGTVEYWLSGNRLmIRITGVPEQVRKELAKEAERLKAEFNIQVEYQIRGSGSGSGSEmmIIFEGDDLEALEKALKEmIRQARKFAGTVEYWLSGNRLmIRITGVPEQVRKELAKEAERLKAEFNIQVEYQIRTGSLEHHHHH 172
                            |  ||   10        20  |     30        40   |    50        60        70        80       |90       100      |110       120       130       140       150       160       170  
                            |  ||                23-MSE               44-MSE                                      88-MSE            107-MSE              128-MSE                                        
                            1-MSE                                                                                  89-MSE                                                                               
                               4-MSE                                                                                                                                                                    
                                5-MSE                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..hhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeeee..hhhhhhhhhhhhhhhhhhhh.eeeeee.........eeeeeee..hhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeeee..hhhhhhhhhhhhhhhhhhhh.eeeeeee........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ney B   1 mGEmmIIFEGDDLEALEKALKEmIRQARKFAGTVEYWLSGNRLmIRITGVPEQVRKELAKEAERLKAEFNIQVEYQIRGSGSGSGSEmmIIFEGDDLEALEKALKEmIRQARKFAGTVEYWLSGNRLmIRITGVPEQVRKELAKEAERLKAEFNIQVEYQIRTGSLEHHHHHH 173
                            |  ||   10        20  |     30        40   |    50        60        70        80       |90       100      |110       120       130       140       150       160       170   
                            1-MSE                23-MSE               44-MSE                                      88-MSE            107-MSE              128-MSE                                         
                               4-MSE                                                                               89-MSE                                                                                
                                5-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NEY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NEY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NEY)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4NEY)

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  Cis Peptide Bonds
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  4ney
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 4NEY)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4NEY)