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(-) Description

Title :  CRYSTAL STRUCTURE OF TWO-DOMAIN LACCASE FROM STREPTOMYCES LIVIDANS AC1709 IN COMPLEX WITH AZIDE AFTER 90 MIN SOAKING
 
Authors :  A. Gabdulkhakov, S. Tischenko, L. Yurevich, A. Lisov, A. Leontievsky
Date :  22 Oct 13  (Deposition) - 29 Oct 14  (Release) - 29 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Multicopper Blue Protein, Two-Domain Laccase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Gabdulkhakov, S. Tischenko, L. Yurevich, A. Lisov, A. Leontievsky
Crystal Structure Of Two-Domain Laccase From Streptomyces Lividans Ac1709 In Complex With Azide After 90 Min Soaking
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - COPPER OXIDASE
    Chains: A
    EC Number: 1.10.3.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SSPG_00990
    Organism Scientific: STREPTOMYCES LIVIDANS
    Organism Taxid: 457428
    Strain: TK24
    Synonym: LACCASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 16)

Asymmetric Unit (8, 16)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
27PE1Ligand/Ion2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL
3AZI3Ligand/IonAZIDE ION
4CU4Ligand/IonCOPPER (II) ION
5GOL4Ligand/IonGLYCEROL
6P6G1Ligand/IonHEXAETHYLENE GLYCOL
7PE51Ligand/Ion3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
8PGE1Ligand/IonTRIETHYLENE GLYCOL
Biological Unit 1 (7, 36)
No.NameCountTypeFull Name
11PE3Ligand/IonPENTAETHYLENE GLYCOL
27PE3Ligand/Ion2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL
3AZI9Ligand/IonAZIDE ION
4CU-1Ligand/IonCOPPER (II) ION
5GOL12Ligand/IonGLYCEROL
6P6G3Ligand/IonHEXAETHYLENE GLYCOL
7PE53Ligand/Ion3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
8PGE3Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:231 , CYS A:288 , HIS A:293 , MET A:298BINDING SITE FOR RESIDUE CU A 401
02AC2SOFTWAREHIS A:104 , HIS A:156 , HIS A:289 , CU A:404 , HOH A:544BINDING SITE FOR RESIDUE CU A 402
03AC3SOFTWAREHIS A:158 , HIS A:236 , HIS A:287 , HOH A:544BINDING SITE FOR RESIDUE CU A 403
04AC4SOFTWAREHIS A:102 , HIS A:104 , HIS A:234 , HIS A:236 , CU A:402 , HOH A:544 , HOH A:545BINDING SITE FOR RESIDUE CU A 404
05AC5SOFTWARELYS A:52BINDING SITE FOR RESIDUE AZI A 405
06AC6SOFTWARELYS A:136 , ARG A:139 , ARG A:146BINDING SITE FOR RESIDUE PGE A 406
07AC7SOFTWAREARG A:98 , LYS A:119 , GLU A:123BINDING SITE FOR RESIDUE GOL A 408
08AC8SOFTWAREGLU A:109 , HOH A:622BINDING SITE FOR RESIDUE GOL A 409
09AC9SOFTWAREGLY A:45 , GLY A:46 , GLU A:47BINDING SITE FOR RESIDUE GOL A 410
10BC1SOFTWARETHR A:38 , ARG A:40 , LYS A:69 , PRO A:187 , ASP A:188 , ASP A:217 , HOH A:561 , HOH A:612BINDING SITE FOR RESIDUE P6G A 411
11BC2SOFTWARELYS A:69 , GLY A:70 , HIS A:191 , GLU A:212 , ALA A:213 , ASP A:217 , VAL A:219BINDING SITE FOR RESIDUE AZI A 412
12BC3SOFTWARETYR A:229 , TYR A:230 , HIS A:293BINDING SITE FOR RESIDUE AZI A 413
13BC4SOFTWAREARG A:49 , GLU A:68 , LEU A:78 , GLU A:80 , HOH A:610BINDING SITE FOR RESIDUE PE5 A 414
14BC5SOFTWAREASP A:60 , ARG A:170 , ASN A:171 , ASP A:197 , ASN A:202 , LYS A:204 , 1PE A:416 , HOH A:511 , HOH A:611 , HOH A:613BINDING SITE FOR RESIDUE 7PE A 415
15BC6SOFTWAREGLN A:62 , SER A:73 , VAL A:74 , PRO A:75 , ASN A:202 , 7PE A:415 , HOH A:620BINDING SITE FOR RESIDUE 1PE A 416

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NAJ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Val A:74 -Pro A:75
2Gly A:208 -Pro A:209

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NAJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NAJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4NAJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:279
                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeeeeeee.....eeee............eeee...eeeeeeee........ee.....hhhhh.............eeeeeee....ee.....ee....eeeeee........hhhhhhhh.eeeeeee........eeeeeeee..ee..........eeee...eeeeeeeee....eeeee....ee...............ee.eeee....eeeeeee.......eeeeeee.hhhhhhh..eeeeeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4naj A  36 GITARTAPAGGEVRHLKMYAEKLADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEISSDGTAMNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDVLPDATHTIVFNDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIPGY 314
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NAJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NAJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NAJ)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

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        D6EFA0_STRLI | D6EFA0: 4gyb 4nb7

(-) Related Entries Specified in the PDB File

4gyb TWO-DOMAIN LACCASE FROM STREPTOMYCES LIVIDANS AT 2.4 A RESOLUTION AC1709
4nb7