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(-) Description

Title :  TWO-DOMAIN LACCASE FROM STREPTOMYCES VIRIDOCHROMOGENES AT 2.4 A RESOLUTION AC629
 
Authors :  A. Gabdulkhakov, S. Tischenko, L. Yurevich, A. Lisov, A. Leontievsky
Date :  18 Oct 13  (Deposition) - 29 Oct 14  (Release) - 29 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Two-Domain Laccase, Oxidoreductase, Multicopper Blue Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Gabdulkhakov, S. Tischenko, L. Yurevich, A. Lisov, A. Leontievsky
Two-Domain Laccase From Streptomyces Viridochromogenes At 2. 4 A Resolution Ac629
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MULTICOPPER OXIDASE
    Chains: A, B, C
    EC Number: 1.10.3.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 33-313
    Organism Scientific: STREPTOMYCES VIRIDOCHROMOGENES
    Organism Taxid: 1938
    Synonym: LACCASE

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric/Biological Unit (3, 16)
No.NameCountTypeFull Name
1CL6Ligand/IonCHLORIDE ION
2CU9Ligand/IonCOPPER (II) ION
3TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:228 , CYS A:285 , HIS A:290 , MET A:295BINDING SITE FOR RESIDUE CU A 401
02AC2SOFTWAREHIS A:233 , HIS A:284 , HOH A:517 , HIS B:155BINDING SITE FOR RESIDUE CU A 402
03AC3SOFTWAREHIS A:101 , HIS A:153 , HIS C:286BINDING SITE FOR RESIDUE CU A 403
04AC4SOFTWARETYR A:226BINDING SITE FOR RESIDUE CL A 404
05AC5SOFTWAREGLY A:180BINDING SITE FOR RESIDUE CL A 405
06AC6SOFTWAREHIS B:228 , CYS B:285 , HIS B:290 , MET B:295BINDING SITE FOR RESIDUE CU B 401
07AC7SOFTWAREHIS B:233 , HIS B:284 , HIS C:155BINDING SITE FOR RESIDUE CU B 402
08AC8SOFTWAREHIS A:286 , HOH A:517 , HIS B:101 , HIS B:153BINDING SITE FOR RESIDUE CU B 403
09AC9SOFTWAREARG B:167 , ASP B:194 , MET B:195 , TYR B:226 , HOH B:521BINDING SITE FOR RESIDUE TRS B 404
10BC1SOFTWAREPRO B:74 , LEU B:75BINDING SITE FOR RESIDUE CL B 405
11BC2SOFTWAREARG B:46 , HIS B:47BINDING SITE FOR RESIDUE CL B 406
12BC3SOFTWAREHIS C:228 , CYS C:285 , HIS C:290 , MET C:295BINDING SITE FOR RESIDUE CU C 401
13BC4SOFTWAREHIS A:155 , HIS C:233 , HIS C:284BINDING SITE FOR RESIDUE CU C 402
14BC5SOFTWAREHIS B:231 , HIS B:286 , HOH B:519 , HIS C:101 , HIS C:153BINDING SITE FOR RESIDUE CU C 403
15BC6SOFTWARETYR C:226 , TYR C:227BINDING SITE FOR RESIDUE CL C 404
16BC7SOFTWAREILE A:107 , ASN A:115 , GLY C:279 , ALA C:280 , PRO C:309 , GLY C:310BINDING SITE FOR RESIDUE CL C 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N8U)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Ile A:71 -Pro A:72
2Gly A:205 -Pro A:206
3Ile B:71 -Pro B:72
4Gly B:205 -Pro B:206
5Ile C:71 -Pro C:72
6Gly C:205 -Pro C:206

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N8U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N8U)

(-) Exons   (0, 0)

(no "Exon" information available for 4N8U)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:275
                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeeeee.....eeee............eeee...eeeeeeee........ee.....hhhhh.............eeeeee.....ee.....ee....eeeeee........hhhhhhh..eeeeeee........eeeeeeee..ee..........eeee...eeeeeeeee....eeeee....ee...............ee.eeee....eeeeeee.......eeeeeee.hhhhhhh..eeeeeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n8u A  37 RTAPAGGEVRHLKLYIEKLADGQLGYGFEKGRATIPGPLIELNEGDTAHIEVENTLDVPASLHVHGLDYEITSDGTKLNRSDVEPGGTRTYTWRTHAPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRKGLYGPVVVRRKGDVLPDATHTIVFNDMLINNQPAHSGPNFEATVGDRVEFVMITHGEYYHTFHMHGHRWADNRTGLLTGPDDPSQVIDNKIVGPADSFGFQVIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKKDGTIPGH 311
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306     


Chain B from PDB  Type:PROTEIN  Length:276
                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeeeeeeeee.....eeee............eeee...eeeeeeee........ee.....hhhhh.............eeeeeee....ee.....ee....eeeeee........hhhhhhh..eeeeeee........eeeeeeee..ee..........eeee...eeeeeeeee....eeeee....ee...............ee.eeee....eeeeeee.......eeeeeee.hhhhhhh..eeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4n8u B  37 RTAPAGGEVRHLKLYIEKLADGQLGYGFEKGRATIPGPLIELNEGDTAHIEVENTLDVPASLHVHGLDYEITSDGTKLNRSDVEPGGTRTYTWRTHAPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRKGLYGPVVVRRKGDVLPDATHTIVFNDMLINNQPAHSGPNFEATVGDRVEFVMITHGEYYHTFHMHGHRWADNRTGLLTGPDDPSQVIDNKIVGPADSFGFQVIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKKDGTIPGHE 312
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306      


Chain C from PDB  Type:PROTEIN  Length:275
                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeeeeee...eeeee............eeee...eeeeeeee........ee.....hhhhh.............eeeeee.....ee.....ee....eeeeee........hhhhhhh..eeeeeee........eeeeeeee..ee..........eeee...eeeeeeeee....eeeee....ee...............ee.eeee....eeeeeee.......eeeeeee.hhhhhhh..eeeeeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n8u C  37 RTAPAGGEVRHLKLYIEKLADGQLGYGFEKGRATIPGPLIELNEGDTAHIEVENTLDVPASLHVHGLDYEITSDGTKLNRSDVEPGGTRTYTWRTHAPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRKGLYGPVVVRRKGDVLPDATHTIVFNDMLINNQPAHSGPNFEATVGDRVEFVMITHGEYYHTFHMHGHRWADNRTGLLTGPDDPSQVIDNKIVGPADSFGFQVIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKKDGTIPGH 311
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4N8U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N8U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N8U)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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