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(-) Description

Title :  CRYSTAL STRUCTURE OF 3RD WW DOMAIN OF HUMAN NEDD4-1
 
Authors :  S. Qi, M. O'Hayre, J. S. Gutkind, J. Hurley
Date :  15 Oct 13  (Deposition) - 08 Jan 14  (Release) - 08 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Beta Sheet, Ww Domain, Target Binding, Proline Rich Region, Cytosolic, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Qi, M. O'Hayre, J. S. Gutkind, J. H. Hurley
Structural And Biochemical Basis For Ubiquitin Ligase Recruitment By Arrestin-Related Domain-Containing Protein-3 (Arrdc3).
J. Biol. Chem. V. 289 4743 2014
PubMed-ID: 24379409  |  Reference-DOI: 10.1074/JBC.M113.527473

(-) Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE NEDD4
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGST-PARALLEL2
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: WW3 DOMAIN (UNP RESIDUES 841-874)
    Gene: KIAA0093, NEDD4, NEDD4-1, PIG53
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CELL PROLIFERATION-INDUCING GENE 53 PROTEIN, NEURAL PRECURSOR CELL EXPRESSED DEVELOPMENTALLY DOWN-REGULATED PROTEIN 4, NEDD-4

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4N7F)

(-) Sites  (0, 0)

(no "Site" information available for 4N7F)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N7F)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4N7F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N7F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N7F)

(-) Exons   (0, 0)

(no "Exon" information available for 4N7F)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:37
                                                                     
               SCOP domains d4n7fa_ A: automated matches          SCOP domains
               CATH domains ------------------------------------- CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.....eeeee....eee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------- PROSITE
                 Transcript ------------------------------------- Transcript
                 4n7f A   1 AMGSFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRL 454
                               ||  427       437       447       
                               4|                                
                              422                                


Chain B from PDB  Type:PROTEIN  Length:37
                                                                     
               SCOP domains d4n7fb_ B: automated matches          SCOP domains
               CATH domains ------------------------------------- CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.....eeeee....eee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------- PROSITE
                 Transcript ------------------------------------- Transcript
                 4n7f B   1 AMGSFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRL 454
                               ||  427       437       447       
                               4|                                
                              422
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N7F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N7F)

(-) Gene Ontology  (67, 67)

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  4n7f
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  NEDD4_HUMAN | P46934
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NEDD4_HUMAN | P46934: 2kpz 2kq0 2m3o 2xbb 2xbf 3b7y 4bbn 4be8 4n7h 5aht 5c7j 5c91

(-) Related Entries Specified in the PDB File

4n7h