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(-) Description

Title :  CRYSTAL STRUCTURE OF (R)-3-HYDROXYBUTYRYL-COA DEHYDROGENASE FROM RALSTONIA EUTROPHA IN COMPLEXED WITH NADP
 
Authors :  J. -E. Kim, S. Kim, K. -J. Kim
Date :  10 Oct 13  (Deposition) - 11 Dec 13  (Release) - 23 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Alpha/Beta Structure, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. -E. Kim, J. H. Chang, E. -J. Kim, K. -J. Kim
Crystal Structure Of (R)-3-Hydroxybutyryl-Coa Dehydrogenase Phab From Ralstonia Eutropha
Biochem. Biophys. Res. Commun. V. 443 783 2014
PubMed-ID: 24211201  |  Reference-DOI: 10.1016/J.BBRC.2013.10.150

(-) Compounds

Molecule 1 - ACETOACETYL-COA REDUCTASE
    Chains: A, B
    EC Number: 1.1.1.36
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PPROEX HTA
    Expression System Strain: B834
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PHBB
    Organism Scientific: RALSTONIA EUTROPHA
    Organism Taxid: 381666
    Strain: H16
    Synonym: (R)-3-HYDROXYBUTYRYLCOA DEHYDROGENASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1NAP4Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:10 , MET A:12 , GLY A:13 , GLY A:14 , ILE A:15 , CYS A:34 , GLY A:35 , SER A:38 , ARG A:40 , GLY A:60 , ASN A:61 , VAL A:62 , ASN A:88 , ALA A:89 , THR A:111 , ILE A:138 , SER A:139 , SER A:140 , TYR A:153 , LYS A:157 , PRO A:183 , GLY A:184 , TYR A:185 , ILE A:186 , THR A:188 , HOH A:425 , HOH A:443 , HOH A:452 , HOH A:513BINDING SITE FOR RESIDUE NAP A 301
2AC2SOFTWAREGLY B:10 , GLY B:13 , GLY B:14 , ILE B:15 , CYS B:34 , GLY B:35 , ARG B:40 , GLY B:60 , ASN B:61 , VAL B:62 , ASN B:88 , ALA B:89 , THR B:111 , ILE B:138 , SER B:139 , SER B:140 , TYR B:153 , LYS B:157 , PRO B:183 , GLY B:184 , ILE B:186 , HOH B:459BINDING SITE FOR RESIDUE NAP B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N5N)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4N5N)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N5N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N5N)

(-) Exons   (0, 0)

(no "Exon" information available for 4N5N)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:244
                                                                                                                                                                                                                                                                                    
               SCOP domains d4n5na_ A: automated matches                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhh.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n5n A   3 QRIAYVTGGMGGIGTAICQRLAKDGFRVVAGCGPNSPRREKWLEQQKALGFDFIASEGNVADWDSTKTAFDKVKSEVGEVDVLINNAGITRDVVFRKMTRADWDAVIDTNLTSLFNVTKQVIDGMADRGWGRIVNISSVNGQKGQFGQTNYSTAKAGLHGFTMALAQEVATKGVTVNTVSPGYIATDMVKAIRQDVLDKIVATIPVKRLGLPEEIASICAWLSSEESGFSTGADFSLNGGLHMG 246
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242    


Chain B from PDB  Type:PROTEIN  Length:244
                                                                                                                                                                                                                                                                                    
               SCOP domains d4n5nb_ B: automated matches                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh.eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n5n B   3 QRIAYVTGGMGGIGTAICQRLAKDGFRVVAGCGPNSPRREKWLEQQKALGFDFIASEGNVADWDSTKTAFDKVKSEVGEVDVLINNAGITRDVVFRKMTRADWDAVIDTNLTSLFNVTKQVIDGMADRGWGRIVNISSVNGQKGQFGQTNYSTAKAGLHGFTMALAQEVATKGVTVNTVSPGYIATDMVKAIRQDVLDKIVATIPVKRLGLPEEIASICAWLSSEESGFSTGADFSLNGGLHMG 246
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N5N)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N5N)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PHAB_CUPNH | P14697: 3vzp 3vzq 3vzr 3vzs 4n5l 4n5m

(-) Related Entries Specified in the PDB File

1q7b 3vzp 4n5l 4n5m