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(-) Description

Title :  X-RAY STRUCTURE OF BRUCELLA ABORTUS RICA
 
Authors :  J. Herrou, S. Crosson
Date :  04 Oct 13  (Deposition) - 11 Dec 13  (Release) - 01 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.73
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Gamma Carbonic Anhydrase, Zinc Binding, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Herrou, S. Crosson
Molecular Structure Of The Brucella Abortus Metalloprotein Rica, A Rab2-Binding Virulence Effector.
Biochemistry V. 52 9020 2013
PubMed-ID: 24251537  |  Reference-DOI: 10.1021/BI401373R

(-) Compounds

Molecule 1 - BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28C
    Expression System Strain: ROSETTA (DE3) PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BAB1_1279, BRUAB1_1263
    Organism Scientific: BRUCELLA ABORTUS
    Organism Taxid: 359391
    Strain: 2308

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric Unit (2, 12)
No.NameCountTypeFull Name
1PE56Ligand/Ion3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
2ZN6Ligand/IonZINC ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1PE53Ligand/Ion3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1PE53Ligand/Ion3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
2ZN-1Ligand/IonZINC ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:67 , HIS A:89 , HOH A:301 , HIS B:84 , HOH B:301BINDING SITE FOR RESIDUE ZN A 201
02AC2SOFTWAREARG A:46 , ASN A:49 , HIS A:67 , ASP A:69 , GLU A:125 , GLN B:61 , GLY B:100 , MET B:101 , SER B:157 , TYR B:161BINDING SITE FOR RESIDUE PE5 A 202
03AC3SOFTWAREGLN A:61 , THR A:81 , GLY A:100 , MET A:101 , ALA A:119 , SER A:157 , TYR A:161 , HOH A:302 , ARG C:46 , ASN C:49 , HIS C:67 , ASP C:69 , GLU C:125BINDING SITE FOR RESIDUE PE5 A 203
04AC4SOFTWAREHIS B:67 , HIS B:89 , HIS C:84 , HOH C:302 , HOH C:303BINDING SITE FOR RESIDUE ZN B 201
05AC5SOFTWAREHIS A:84 , HOH A:302 , HIS C:67 , HIS C:89 , HOH C:301BINDING SITE FOR RESIDUE ZN C 201
06AC6SOFTWAREARG B:46 , ASP B:48 , ASN B:49 , ASP B:69 , LEU B:122 , LEU C:98 , GLY C:100 , MET C:101 , ALA C:119 , VAL C:136 , GLY C:137 , HOH C:302BINDING SITE FOR RESIDUE PE5 C 202
07AC7SOFTWAREHIS D:67 , HIS D:89 , HOH D:301 , HIS E:84 , HOH E:302BINDING SITE FOR RESIDUE ZN D 201
08AC8SOFTWAREGLN D:61 , GLY D:83 , GLY D:100 , MET D:101 , ALA D:119 , TYR D:161 , HOH D:302 , ASP F:48 , ASN F:49 , HIS F:67 , ASP F:69 , HOH F:301BINDING SITE FOR RESIDUE PE5 D 202
09AC9SOFTWAREHIS E:67 , HIS E:89 , HOH E:301 , HIS F:84 , HOH F:302BINDING SITE FOR RESIDUE ZN E 201
10BC1SOFTWAREARG E:46 , ASP E:48 , ASN E:49 , HIS E:67 , ASP E:69 , GLU E:125 , HOH E:301 , GLN F:61 , THR F:81 , GLY F:100 , MET F:101 , GLY F:118 , ALA F:119 , SER F:157 , TYR F:161 , ARG F:164 , HOH F:302BINDING SITE FOR RESIDUE PE5 E 202
11BC2SOFTWAREARG D:46 , ASN D:49 , HIS D:67 , GLU D:125 , HOH D:301 , GLN E:61 , THR E:81 , GLY E:100 , MET E:101 , ALA E:119 , LEU E:134 , ARG E:144 , SER E:157 , TYR E:161BINDING SITE FOR RESIDUE PE5 E 203
12BC3SOFTWAREHIS D:84 , HOH D:302 , HIS F:67 , HIS F:89 , HOH F:301BINDING SITE FOR RESIDUE ZN F 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N27)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Ser A:138 -Pro A:139
2Ser B:138 -Pro B:139
3Ser C:138 -Pro C:139
4Ser D:138 -Pro D:139
5Ser E:138 -Pro E:139
6Ser F:138 -Pro F:139

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N27)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N27)

(-) Exons   (0, 0)

(no "Exon" information available for 4N27)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains d4n27a_ A: automated matches                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.....ee......ee....eeeeeeee....ee....eeeeeeeeeee....ee....eee......eee....ee....eee..ee....ee....ee....ee....ee....ee....ee...eeee....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n27 A   1 MPIYAYNGHKPQFADRESNWIAPDATLIGKVVVGENAGFWFGAVLRGDNEPITIGADTNVQEQTIMHTDIGFPLTIGAGCTIGHRAILHGCTIGENTLIGMGAIVLNGAKVGKNCLIGAGTLVKEGMEIPDNSLVVGSPARVLRQLDDAAVEKLRASAKHYVERGHSFMRGMEPA 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     


Chain B from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains d4n27b_ B: automated matches                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.....ee.hhhhhee....eeeeeeee....ee....eeeeeeeeeee....ee....eee......eee....ee....eee..ee....ee....ee....ee....ee....ee....ee...eeee....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n27 B   1 MPIYAYNGHKPQFADRESNWIAPDATLIGKVVVGENAGFWFGAVLRGDNEPITIGADTNVQEQTIMHTDIGFPLTIGAGCTIGHRAILHGCTIGENTLIGMGAIVLNGAKVGKNCLIGAGTLVKEGMEIPDNSLVVGSPARVLRQLDDAAVEKLRASAKHYVERGHSFMRGMEPA 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     


Chain C from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains d4n27c_ C: automated matches                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.....ee.hhhhhee....eeeeeeee....ee....eeeeeeeeeee....ee....eee......eee....ee....eee..ee....ee....ee....ee....ee....ee....ee...eeee....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n27 C   1 MPIYAYNGHKPQFADRESNWIAPDATLIGKVVVGENAGFWFGAVLRGDNEPITIGADTNVQEQTIMHTDIGFPLTIGAGCTIGHRAILHGCTIGENTLIGMGAIVLNGAKVGKNCLIGAGTLVKEGMEIPDNSLVVGSPARVLRQLDDAAVEKLRASAKHYVERGHSFMRGMEPA 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     


Chain D from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains d4n27d_ D: automated matches                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.....ee.hhhhh......eeeeeeee....ee....eeeeeeeeeee....ee....eee......eee....ee....eee..ee....ee....ee....ee....ee....ee....ee...eeee....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n27 D   1 MPIYAYNGHKPQFADRESNWIAPDATLIGKVVVGENAGFWFGAVLRGDNEPITIGADTNVQEQTIMHTDIGFPLTIGAGCTIGHRAILHGCTIGENTLIGMGAIVLNGAKVGKNCLIGAGTLVKEGMEIPDNSLVVGSPARVLRQLDDAAVEKLRASAKHYVERGHSFMRGMEPA 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     


Chain E from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains d4n27e_ E: automated matches                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.....ee.hhhhhee....eeeeeeee....ee....eeeeeeeeeee....ee....eee......eee....ee....eee..ee....ee....ee....ee....ee....ee....ee...eeee....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n27 E   1 MPIYAYNGHKPQFADRESNWIAPDATLIGKVVVGENAGFWFGAVLRGDNEPITIGADTNVQEQTIMHTDIGFPLTIGAGCTIGHRAILHGCTIGENTLIGMGAIVLNGAKVGKNCLIGAGTLVKEGMEIPDNSLVVGSPARVLRQLDDAAVEKLRASAKHYVERGHSFMRGMEPA 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     


Chain F from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains d4n27f_ F: automated matches                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.....ee............eeeeeeee....ee....eeeeeeeeeee....ee....eee......eee....ee....eee..ee....ee....ee....ee....ee....ee....ee...eeee....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n27 F   1 MPIYAYNGHKPQFADRESNWIAPDATLIGKVVVGENAGFWFGAVLRGDNEPITIGADTNVQEQTIMHTDIGFPLTIGAGCTIGHRAILHGCTIGENTLIGMGAIVLNGAKVGKNCLIGAGTLVKEGMEIPDNSLVVGSPARVLRQLDDAAVEKLRASAKHYVERGHSFMRGMEPA 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N27)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N27)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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  4n27
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 Related Entries

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