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(-) Description

Title :  CRYSTAL STRUCTURE OF SUMO E3 LIGASE PIAS3
 
Authors :  A. Dong, J. Hu, Y. Li, W. Tempel, C. Bountra, C. H. Arrowsmith, A. M. Edwar Y. Tong, Structural Genomics Consortium (Sgc)
Date :  24 Sep 13  (Deposition) - 16 Oct 13  (Release) - 16 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Sumo, E3 Ligase, Pinit Domain, Sp-Ring Domain, Structural Genomics, Structural Genomics Consortium, Sgc, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Hu, A. Dong, Y. Li, W. Tempel, C. Bountra, C. H. Arrowsmith, A. M. Edwards, Y. Tong, Structural Genomics Consortium (Sgc)
Crystal Structure Of Sumo E3 Ligase Pias3
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - E3 SUMO-PROTEIN LIGASE PIAS3
    Chains: A, B, C, D
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28-MHL
    Expression System Strain: BL21-V2R
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 112-467
    Gene: PIAS3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEIN INHIBITOR OF ACTIVATED STAT PROTEIN 3

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 38)

Asymmetric Unit (3, 38)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2UNX32Ligand/IonUNKNOWN ATOM OR ION
3ZN4Ligand/IonZINC ION
Biological Unit 1 (1, 10)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2UNX10Ligand/IonUNKNOWN ATOM OR ION
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 7)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2UNX7Ligand/IonUNKNOWN ATOM OR ION
3ZN-1Ligand/IonZINC ION
Biological Unit 3 (1, 9)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2UNX9Ligand/IonUNKNOWN ATOM OR ION
3ZN-1Ligand/IonZINC ION
Biological Unit 4 (1, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2UNX6Ligand/IonUNKNOWN ATOM OR ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:343 , HIS A:345 , CYS A:366 , CYS A:369BINDING SITE FOR RESIDUE ZN A 501
2AC2SOFTWAREASN A:296 , HIS A:299 , ASN B:296 , HIS B:299BINDING SITE FOR RESIDUE CL A 502
3AC3SOFTWARECYS B:343 , HIS B:345 , CYS B:366 , CYS B:369BINDING SITE FOR RESIDUE ZN B 501
4AC4SOFTWARECYS C:343 , HIS C:345 , CYS C:366 , CYS C:369BINDING SITE FOR RESIDUE ZN C 501
5AC5SOFTWAREASN C:296 , HIS C:299 , ASN D:296 , HIS D:299BINDING SITE FOR RESIDUE CL C 502
6AC6SOFTWARECYS D:343 , HIS D:345 , CYS D:366 , CYS D:369BINDING SITE FOR RESIDUE ZN D 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MVT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MVT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MVT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MVT)

(-) Exons   (0, 0)

(no "Exon" information available for 4MVT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................hhhhhhhhhh....................................................hhhh.............................hhhhhhhhhhhh...hhhhhhhhhhhhh..........................................hhhhhhhhhhh............hhh....hhhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mvt A 126 DVTMKPLPFYEVYGELIRPTTLFEEAHFTFALTPQQVQQILTSRDYTIQVQLRFCLCETSCPQEDYFPPNLFVKVNGKLCPLPGYKRPSRPINITPLARLSATVPNTIVVNWSSRNYSLSVYLVRQLTAGTLLQKLRAKGIRNPDHSRALIKEKLTADPDSEVATTSLRVSLMCPLGKMRLTVPCRALTCAHLQSFDAALYLQMNEKKPTWTCPVCDKKAPYESLIIDGLFMEILSSCSDCDEIQFMEDGSWCPM 408
                                   135       145 ||    162       172   ||  190       200       210       220    || 240       250       260   ||  273       283       293       303       313       323       333       343       353       363       373       383       393       403     
                                               147|                  176|                                     225|                         264|                                                                                                                                            
                                                155                   185                                      236                          268                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:251
                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................hhhhhhhhhh....................................................hhhh..............................hhhhhhhhhhhh...hhhhhhhhhhhhhh.....................................hhhhhhhhhhh............hhh....hhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mvt B 126 DVTMKPLPFYEVYGELIRPTTLFEEAHFTFALTPQQVQQILTSRDYTIQVQLRFCLCETSCPQEDYFPPNLFVKVNGKLCPLPGYKRPSRPINITPLARLSATVPNTIVVNWSSERNYSLSVYLVRQLTAGTLLQKLRAKGIRNPDHSRALIKEKLTADPDSESLRVSLMCPLGKMRLTVPCRALTCAHLQSFDAALYLQMNEKKPTWTCPVCDKKAPYESLIIDGLFMEILSSCSDCDEIQFMDGSWCPM 408
                                   135       145 ||    162       172   ||  190       200       210       220    || 240       250       260    || 272       282       292       302       312  ||   326       336       346       356       366       376       386       396   ||  407 
                                               147|                  176|                                     225|                          265|                                            315|                                                                             400|      
                                                155                   185                                      236                           268                                             320                                                                              402      


Chain C from PDB  Type:PROTEIN  Length:253
                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............................hhhhhhhhhh...................................................hhhh.............................hhhhhhhhhhhh...hhhhhhhhhhhhh..........................................hhhhhhhhhhh............hhh....hhhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mvt C 126 DVTMKPLPFYEVYGELIRPTTLEEAHFTFALTPQQVQQILTSRDYTIQVQLRFCLCETSCPQEDYFPPNLFVKVNGKLCPLPGYRPSRPINITPLARLSATVPNTIVVNWSSRNYSLSVYLVRQLTAGTLLQKLRAKGIRNPDHSRALIKEKLTADPDSEVATTSLRVSLMCPLGKMRLTVPCRALTCAHLQSFDAALYLQMNEKKPTWTCPVCDKKAPYESLIIDGLFMEILSSCSDCDEIQFMEDGSWCPM 408
                                   135       145 ||    163       173  ||   191       201       211       221   ||  242       252       262 ||    275       285       295       305       315       325       335       345       355       365       375       385       395       405   
                                               147|                 176|                                     225|                        264|                                                                                                                                            
                                                156                  185                                      237                         268                                                                                                                                            


Chain D from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............................hhhhhhhhhh....................................................hhhh.............................hhhhhhhhhhhh...hhhhhhhhhhhhh......................................hhhhhhhhhhh............hhh....hhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mvt D 126 DVTMKPLPFYEVYGELIRPTTLEEAHFTFALTPQQVQQILTSRDYTIQVQLRFCLCETSCPQEDYFPPNLFVKVNGKLCPLPGYKRPSRPINITPLARLSATVPNTIVVNWSSRNYSLSVYLVRQLTAGTLLQKLRAKGIRNPDHSRALIKEKLTADPDSESLRVSLMCPLGKMRLTVPCRALTCAHLQSFDAALYLQMNEKKPTWTCPVCDKKAPYESLIIDGLFMEILSSCSDCDEIQFMDGSWCPM 408
                                   135       145 ||    163       173  ||   191       201       211       221   ||  241       251       261  ||   274       284       294       304       314||     328       338       348       358       368       378       388       398 ||      
                                               147|                 176|                                     225|                         264|                                            315|                                                                             400|      
                                                156                  185                                      236                          268                                             320                                                                              402
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MVT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MVT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MVT)

(-) Gene Ontology  (23, 23)

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