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(-) Description

Title :  1.43 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF TRIOSEPHOSPHATE ISOMERASE (TPIA) FROM ESCHERICHIA COLI IN COMPLEX WITH ACETYL PHOSPHATE.
 
Authors :  G. Minasov, M. L. Kuhn, I. Dubrovska, J. Winsor, L. Shuvalova, S. Grimsh K. Kwon, W. F. Anderson, Center For Structural Genomics Of Infec Diseases (Csgid)
Date :  23 Sep 13  (Deposition) - 16 Apr 14  (Release) - 30 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.43
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Tim Beta/Alpha Barrel, Triose-Phosphate Isomerase Activity, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. L. Kuhn, B. Zemaitaitis, L. I. Hu, A. Sahu, D. Sorensen, G. Minasov, B. P. Lima, M. Scholle, M. Mrksich, W. F. Anderson, B. W. Gibson, B. Schilling, A. J. Wolfe
Structural, Kinetic And Proteomic Characterization Of Acety Phosphate-Dependent Bacterial Protein Acetylation.
Plos One V. 9 94816 2014
PubMed-ID: 24756028  |  Reference-DOI: 10.1371/JOURNAL.PONE.0094816

(-) Compounds

Molecule 1 - TRIOSEPHOSPHATE ISOMERASE
    Chains: A, B
    EC Number: 5.3.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: TRIOSEPHOSPHATE ISOMERASE (TPIA)
    Gene: BWG_3588, TPIA
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 595496
    Strain: K-12 SUBSTR. MG1655
    Synonym: TIM, TRIOSE-PHOSPHATE ISOMERASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 7)

Asymmetric/Biological Unit (5, 7)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2EDO2Ligand/Ion1,2-ETHANEDIOL
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
4PO41Ligand/IonPHOSPHATE ION
5UVW2Ligand/IonACETYLPHOSPHATE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:21 , LEU A:22 , ASN A:25 , ALA A:239 , HOH A:535 , HOH A:595BINDING SITE FOR RESIDUE CL A 301
2AC2SOFTWARELYS A:11 , SER A:212 , GLY A:233 , GLY A:234 , HOH A:427 , HOH A:429 , HOH A:438 , HOH A:441 , HOH A:651 , HOH A:702 , HOH A:835 , HOH A:836BINDING SITE FOR RESIDUE UVW A 302
3AC3SOFTWAREARG A:16 , HOH A:839 , ARG B:52BINDING SITE FOR RESIDUE PO4 A 303
4AC4SOFTWAREHIS A:17 , ARG A:52 , HOH A:740 , HOH A:837BINDING SITE FOR RESIDUE EDO A 304
5AC5SOFTWARELYS B:11 , ILE B:172 , SER B:212 , GLY B:233 , GLY B:234 , PEG B:303 , HOH B:435 , HOH B:559 , HOH B:570 , HOH B:756BINDING SITE FOR RESIDUE UVW B 301
6AC6SOFTWARESER A:177 , ALA A:178 , THR A:179 , ASN B:214 , SER B:216 , ASN B:217BINDING SITE FOR RESIDUE EDO B 302
7AC7SOFTWARELYS B:11 , HIS B:95 , GLY B:233 , GLY B:234 , UVW B:301 , HOH B:403 , HOH B:435 , HOH B:519 , HOH B:570 , HOH B:684 , HOH B:756BINDING SITE FOR RESIDUE PEG B 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MVA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MVA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MVA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MVA)

(-) Exons   (0, 0)

(no "Exon" information available for 4MVA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.....hhhhhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhh....eeee...............hhhhhhhhh..eeee.hhhhhhhh..hhhhhhhhhhhhhhh..eeeeee..hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..eeee.hhhhh......hhhhhhhhhhhhhhhhhh.hhhhhhhheeee.......hhhhhhh.....eeeehhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mva A   1 MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250     


Chain B from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.....hhhhhhhhhhhhhhhh......eeeee.hhhhhhhhhhhh.....eeee...............hhhhhhhhheeeeee.hhhhhhhh..hhhhhhhhhhhhhhhh.eeeeee..hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..eeee.hhhhh......hhhhhhhhhhhhhhhhhh.hhhhhhhheeee.......hhhhhhh.....eeeehhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mva B   1 MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQ 254
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MVA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MVA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MVA)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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4k6a REVISED CRYSTAL STRUCTURE OF APO-FORM OF TRIOSEPHOSPHATE ISOMERASE (TPIA) FROM ESCHERICHIA COLI AT 1.8 ANGSTROM RESOLUTION. RELATED ID: IDP91829 RELATED DB: TARGETTRACK