4MRP - JenaLib

Title :   STRUCTURE OF A BACTERIAL ATM1-FAMILY ABC TRANSPORTER

Authors :   J. Y. Lee, J. G. Yang, D. Zhitnitsky, O. Lewinson, D. C. Rees

Date :   17 Sep 13 (Deposition) - 19 Mar 14 (Release) - 19 Mar 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym./Biol. Unit : A,B

Keywords :   Membrane Protein, Substrate Exporter, Heavy Metal Resistance, Membrane, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Y. Lee, J. G. Yang, D. Zhitnitsky, O. Lewinson, D. C. Rees
Structural Basis For Heavy Metal Detoxification By An Atm1-Type Abc Exporter.
Science V. 343 1133 2014
PubMed-ID: 24604198 | Reference-DOI: 10.1126/SCIENCE.1246489

Compounds

Molecule 1 - ABC TRANSPORTER RELATED PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15B, PJL-H6
	Expression System Strain	:	B834(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	ATM1, SARO_2631
	Organism Scientific	:	NOVOSPHINGOBIUM AROMATICIVORANS
	Organism Taxid	:	279238
	Strain	:	DSM 12444

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 34)

Asymmetric/Biological Unit (4, 34)

No.	Name	Count	Type	Full Name
1	GSH	2	Ligand/Ion	GLUTATHIONE
2	LDA	4	Ligand/Ion	LAURYL DIMETHYLAMINE-N-OXIDE
3	MSE	24	Mod. Amino Acid	SELENOMETHIONINE
4	PO4	4	Ligand/Ion	PHOSPHATE ION

Sites (10, 10)

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR A:113 , ARG A:146 , GLY A:147 , THR A:148 , ILE A:330 , ASP A:331 , GLU A:334 , MSE A:335	BINDING SITE FOR RESIDUE LDA A 701
02	AC2	SOFTWARE	ASP A:217 , TYR A:247 , ALA B:117 , VAL B:120 , THR B:148	BINDING SITE FOR RESIDUE LDA A 702
03	AC3	SOFTWARE	ASN A:269 , GLN A:272 , ASP A:316 , MSE A:317 , LEU A:318 , GLY A:319 , MSE A:320 , TYR B:156 , MSE B:317 , GSH B:703	BINDING SITE FOR RESIDUE GSH A 703
04	AC4	SOFTWARE	ARG A:114 , HOH A:870 , ARG B:252	BINDING SITE FOR RESIDUE PO4 A 704
05	AC5	SOFTWARE	PRO A:395 , SER A:396 , GLY A:397 , ALA A:398 , GLY A:399 , LYS A:400 , SER A:401	BINDING SITE FOR RESIDUE PO4 A 705
06	AC6	SOFTWARE	ALA A:117 , ILE A:144 , THR A:148 , ASP B:217 , ALA B:224 , TYR B:247	BINDING SITE FOR RESIDUE LDA B 701
07	AC7	SOFTWARE	THR B:113 , ALA B:117 , ARG B:146 , GLY B:147 , THR B:148 , ASP B:331 , GLU B:334 , MSE B:335	BINDING SITE FOR RESIDUE LDA B 702
08	AC8	SOFTWARE	TYR A:156 , MSE A:317 , GSH A:703 , LEU B:268 , ASN B:269 , GLN B:272 , ASP B:316 , MSE B:317 , LEU B:318 , GLY B:319 , MSE B:320	BINDING SITE FOR RESIDUE GSH B 703
09	AC9	SOFTWARE	SER B:396 , GLY B:399 , LYS B:400 , SER B:401 , HOH B:804	BINDING SITE FOR RESIDUE PO4 B 704
10	BC1	SOFTWARE	ARG A:252 , ARG B:114 , HIS B:115 , HOH B:888	BINDING SITE FOR RESIDUE PO4 B 705

SS Bonds (0, 0)

Cis Peptide Bonds (5, 5)

Asymmetric/Biological Unit

No.	Residues
1	Gln A:74	-	Pro A:75
2	Gly A:181	-	Leu A:182
3	Leu B:69	-	Gly B:70
4	Gly B:181	-	Leu B:182
5	Glu B:493	-	Arg B:494

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:600
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................eeeeeeee........eeeeeeee....eeeee.....hhhhhhhhhh......eeeeee..ee.hhhhhhhhhhheeee.........hhhhhhhh.....hhhhhhhhhhhh.hhhhhhh..hhhhh.........hhhhhhhhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhh...eeeee..hhhhhh...eeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mrp A   8 NPKDARHDGWQTLKRFLPYLWPADNAVLRRRVVGAILmVLLGKATTLALPFAYKKAVDAmTLGGGAQPALTVALAFVLAYALGRFSGVLFDNLRNIVFERVGQDATRHLAENVFARLHKLSLRFHLARRTGEVTKVIERGTKSIDTmLYFLLFNIAPTVIELTAVIVIFWLNFGLGLVTATILAVIAYVWTTRTITEWRTHLREKmNRLDGQALARAVDSLLNYETVKYFGAESREEARYASAARAYADAAVKSENSLGLLNIAQALIVNLLmAGAmAWTVYGWSQGKLTVGDLVFVNTYLTQLFRPLDmLGmVYRTIRQGLIDmAEmFRLIDTHIEVADVPNAPALVVNRPSVTFDNVVFGYDRDREILHGLSFEVAAGSRVAIVGPSGAGKSTIARLLFRFYDPWEGRILIDGQDIAHVTQTSLRAALGIVPQDSVLFNDTIGYNIAYGRDGASRAEVDAAAKGAAIADFIARLPQGYDTEVGERGLKLSGGEKQRVAIARTLVKNPPILLFDEATSALDTRTEQDILSTmRAVASHRTTISIAHRLSTIADSDTILVLDQGRLAEQGSHLDLLRRDGLYAEmWARQAAESAEVSEAA 607
                                    17        27        37       |47        57        67        77        87        97       107       117       127       137       147      |157       167       177       187       197       207     | 217       227       237       247       257       267       277  |   |287       297       307       317  |    327    |  337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537  |    547       557       567       577       587    |  597       607
                                                                45-MSE                67-MSE                                                                                154-MSE                                                    213-MSE                                                            280-MSE                              317-MSE        332-MSE                                                                                                                                                                                                         540-MSE                                             592-MSE           
                                                                                                                                                                                                                                                                                                              284-MSE                             320-MSE        335-MSE

Chain B from PDB  Type:PROTEIN  Length:598
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................eeeeeeee........eeeeeeee....eeeee.....hhhhhhhhhh......eeeeee..ee.hhhhhhhhhhheeeee.......eehhhhhhh.....hhhhhhhhhhhh.hhhhhhh..hhhh.ee.......hhhhhhhhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhh...eeeee..hhhhhh...eeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mrp B   9 PKDARHDGWQTLKRFLPYLWPADNAVLRRRVVGAILmVLLGKATTLALPFAYKKAVDAmTLGGGAQPALTVALAFVLAYALGRFSGVLFDNLRNIVFERVGQDATRHLAENVFARLHKLSLRFHLARRTGEVTKVIERGTKSIDTmLYFLLFNIAPTVIELTAVIVIFWLNFGLGLVTATILAVIAYVWTTRTITEWRTHLREKmNRLDGQALARAVDSLLNYETVKYFGAESREEARYASAARAYADAAVKSENSLGLLNIAQALIVNLLmAGAmAWTVYGWSQGKLTVGDLVFVNTYLTQLFRPLDmLGmVYRTIRQGLIDmAEmFRLIDTHIEVADVPNAPALVVNRPSVTFDNVVFGYDRDREILHGLSFEVAAGSRVAIVGPSGAGKSTIARLLFRFYDPWEGRILIDGQDIAHVTQTSLRAALGIVPQDSVLFNDTIGYNIAYGRDGASRAEVDAAAKGAAIADFIARLPQGYDTEVGERGLKLSGGEKQRVAIARTLVKNPPILLFDEATSALDTRTEQDILSTmRAVASHRTTISIAHRLSTIADSDTILVLDQGRLAEQGSHLDLLRRDGLYAEmWARQAAESAEVSEA 606
                                    18        28        38      | 48        58        68        78        88        98       108       118       128       138       148     | 158       168       178       188       198       208    |  218       228       238       248       258       268       278 |   | 288       298       308       318 |     328   |  |338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538 |     548       558       568       578       588   |   598        
                                                               45-MSE                67-MSE                                                                                154-MSE                                                    213-MSE                                                            280-MSE                              317-MSE        332-MSE                                                                                                                                                                                                         540-MSE                                             592-MSE          
                                                                                                                                                                                                                                                                                                             284-MSE                             320-MSE        335-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (11, 11)

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	Cis Peptide Bonds
		Gln A:74 - Pro A:75	[ RasMol ]
		Glu B:493 - Arg B:494	[ RasMol ]
		Gly A:181 - Leu A:182	[ RasMol ]
		Gly B:181 - Leu B:182	[ RasMol ]
		Leu B:69 - Gly B:70	[ RasMol ]

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	4mrp
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