4MQB - JenaLib

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Title :   CRYSTAL STRUCTURE OF THYMIDYLATE KINASE FROM STAPHYLOCOCCUS AUREUS IN COMPLEX WITH 2-(N-MORPHOLINO)ETHANESULFONIC ACID

Authors :   E. V. Filippova, G. Minasov, L. Shuvalova, O. Kiryukhina, R. Jedrzejcz G. Babnigg, E. Rubin, J. Sacchettini, A. Joachimiak, W. F. Anderson, M Center For Structural Genomics (Mcsg), Structures Of Mtb Pro Conferring Susceptibility To Known Mtb Inhibitors (Mtbi)

Date :   16 Sep 13 (Deposition) - 23 Oct 13 (Release) - 23 Oct 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.55

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A (1x),B (1x)

Keywords :   Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Mtb Proteins Conferring Susceptibility To Known Mtb Inhibitors, Mtbi, Thymidylate Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. V. Filippova, G. Minasov, L. Shuvalova, O. Kiryukhina, R. Jedrzejczak, G. Babnigg, E. Rubin, J. Sacchettini, A. Joachimiak, W. F. Anderson
Crystal Structure Of Thymidylate Kinase From Staphylococcus Aureus In Complex With 2-(N-Morpholino)Ethanesulfonic Acid
To Be Published
PubMed: search

Molecule 1 - THYMIDYLATE KINASE
	Chains	:	A, B
	EC Number	:	2.7.4.9
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21(DE3)MAGIC
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	TMK, SAV0482
	Organism Scientific	:	STAPHYLOCOCCUS AUREUS
	Organism Taxid	:	158878
	Strain	:	MU50
	Synonym	:	DTMP KINASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:	A (1x)	B (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 10)

No.	Name	Count	Type	Full Name
1	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2	MSE	7	Mod. Amino Acid	SELENOMETHIONINE
3	PG4	2	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 1 (3, 10)

No.	Name	Count	Type	Full Name
1	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2	MSE	7	Mod. Amino Acid	SELENOMETHIONINE
3	PG4	2	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 2 (3, 6)

No.	Name	Count	Type	Full Name
1	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
3	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:37 , ARG A:48 , PHE A:66 , ARG A:70 , SER A:96 , SER A:97 , HOH A:403 , HOH A:518	BINDING SITE FOR RESIDUE MES A 301
2	AC2	SOFTWARE	PRO A:10 , GLY A:12 , GLY A:14 , LYS A:15 , THR A:16 , THR A:17 , ARG A:92	BINDING SITE FOR RESIDUE PG4 A 302
3	AC3	SOFTWARE	GLY B:14 , LYS B:15 , THR B:16 , THR B:17 , ARG B:141 , LYS B:144 , ASN B:145 , LEU B:187 , HOH B:405 , HOH B:462 , HOH B:544	BINDING SITE FOR RESIDUE PG4 B 301

(no "SS Bond" information available for 4MQB)

Asymmetric Unit

No.	Residues
1	Glu A:37	-	Pro A:38
2	Glu B:37	-	Pro B:38

(no "SAP(SNP)/Variant" information available for 4MQB)

(no "PROSITE Motif" information available for 4MQB)

(no "Exon" information available for 4MQB)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains d4mqba_ A: automated matches                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhh......hhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mqb A   1 mSAFITFEGPEGSGKTTVINEVYHRLVKDYDVImTREPGGVPTGEEIRKIVLEGNDmDIRTEAmLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHSQRFKSVNADQPLENVVEDTYQTIIKYLEKI 205
                            |       10        20        30   |    40        50      | 60   |    70        80        90       100       110       120       130       140       150       160       170 ||    182       192       202   
                            |                               34-MSE                 57-MSE 64-MSE                                                                                                     172|                              
                            1-MSE                                                                                                                                                                     175

Chain B from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains d4mqbb_ B: automated matches                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhh......hhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mqb B   2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVImTREPGGVPTGEEIRKIVLEGNDmDIRTEAmLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEK 204
                                    11        21        31  |     41        51     |  61  |     71        81        91       101       111       121       131       141       151       161       171       181       191       201   
                                                           34-MSE                 57-MSE 64-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

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Class: Alpha and beta proteins (a/b) (23833)

Fold: P-loop containing nucleoside triphosphate hydrolases (2083)

Superfamily: P-loop containing nucleoside triphosphate hydrolases (2083)

Family: automated matches (303)

Protein domain: automated matches (303)

Staphylococcus aureus [TaxId: 158878] (4)

1a	d4mqba_	A:
1b	d4mqbb_	B:

(no "CATH Domain" information available for 4MQB)

(no "Pfam Domain" information available for 4MQB)

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	Cis Peptide Bonds
		Glu A:37 - Pro A:38	[ RasMol ]
		Glu B:37 - Pro B:38	[ RasMol ]

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	KTHY_STAAM \| P65248	:	2ccg 2ccj 2cck 4dwj 4eaq 4f4i 4gfd

4dwj
4eaq
4f4i	RELATED ID: MCSG-APC105704 RELATED DB: TARGETTRACK

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Ligands, Modified Residues, Ions (3, 10)

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