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(-) Description

Title :  PHOSPHORYLATION OF AN ACTIVE SITE THREONINE IN THE BENZYOLFORMATE DECARBOXYLASE MUTANT S26T BY PHOSPHONATE INACTIVATION
 
Authors :  F. H. Andrews, M. J. Mcleish
Date :  12 Sep 13  (Deposition) - 18 Mar 15  (Release) - 18 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. H. Andrews, M. J. Mcleish
Phosphorylation Of An Active Site Threonine In The Benzyolformate Decarboxylase Mutant S26T By Phosphonate Inactivation
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BENZOYLFORMATE DECARBOXYLASE
    Chains: A
    EC Number: 4.1.1.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MDLC
    Mutation: YES
    Organism Scientific: PSEUDOMONAS PUTIDA
    Organism Taxid: 303
    Synonym: BFD, BFDC

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 9)

Asymmetric Unit (6, 9)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2CL1Ligand/IonCHLORIDE ION
3GOL3Ligand/IonGLYCEROL
4MG1Ligand/IonMAGNESIUM ION
5TPO1Mod. Amino AcidPHOSPHOTHREONINE
6TPP1Ligand/IonTHIAMINE DIPHOSPHATE
Biological Unit 1 (3, 20)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3GOL12Ligand/IonGLYCEROL
4MG-1Ligand/IonMAGNESIUM ION
5TPO4Mod. Amino AcidPHOSPHOTHREONINE
6TPP4Ligand/IonTHIAMINE DIPHOSPHATE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:428 , ASN A:455 , THR A:457 , TPP A:604 , HOH A:719BINDING SITE FOR RESIDUE CA A 601
2AC2SOFTWAREASN A:117 , LEU A:118 , ARG A:120BINDING SITE FOR RESIDUE MG A 602
3AC3SOFTWAREGLU A:37 , ASP A:364 , HOH A:780 , HOH A:936 , HOH A:1010 , HOH A:1090 , HOH A:1145 , HOH A:1234BINDING SITE FOR RESIDUE CA A 603
4AC4SOFTWAREASN A:23 , PRO A:24 , GLY A:25 , TPO A:26 , GLU A:47 , HIS A:70 , ASN A:77 , GLU A:375 , THR A:377 , SER A:378 , GLY A:401 , LEU A:403 , GLY A:427 , ASP A:428 , GLY A:429 , SER A:430 , TYR A:433 , ASN A:455 , THR A:457 , TYR A:458 , GLY A:459 , ALA A:460 , LEU A:461 , CA A:601 , HOH A:730 , HOH A:809BINDING SITE FOR RESIDUE TPP A 604
5AC5SOFTWARELEU A:43 , GLN A:443 , GLY A:475 , LEU A:476 , ASP A:477 , HOH A:1061 , HOH A:1107 , HOH A:1207BINDING SITE FOR RESIDUE GOL A 605
6AC6SOFTWAREALA A:102 , ALA A:133 , GLU A:134 , HIS A:137 , ASP A:168 , HOH A:753 , HOH A:799 , HOH A:961BINDING SITE FOR RESIDUE GOL A 606
7AC7SOFTWAREALA A:196 , ARG A:294 , ILE A:296 , ASP A:312 , HOH A:1094 , HOH A:1204BINDING SITE FOR RESIDUE GOL A 607
8AC8SOFTWAREARG A:184 , ASP A:187 , HOH A:981BINDING SITE FOR RESIDUE CL A 608

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MPJ)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Arg A:120 -Pro A:121
2Ala A:149 -Pro A:150
3Val A:277 -Phe A:278

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MPJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MPJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4MPJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:525
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...eeee..hhhhhhhhh......eeee..hhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhh...eeeeeee.hhhhhh........hhhhh......eee...hhhhhhhhhhhhhhhhhh.....eeeeee.hhh....hhhhhhhh..........hhhhhhhhhhhhhhh...eeeehhhhhhh.hhhhhhhhhhhhh..eee...............eeee...hhhhhhhhhh...eeeee....................eeeeee.hhhhhhhh...eeee.hhhhhhhhhhhhh........................hhhhhhhhhhhhh....eeeee...hhhhhhhhh.......eee.......hhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhh.............hhhhhhhhh..eeeee.hhhhhhhhhhhhhhh...eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mpj A   2 ASVHGTTYELLRRQGIDTVFGNPGtNELPFLKDFPEDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVSTVSP 526
                                    11        21    |   31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521     
                                                   26-TPO
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MPJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MPJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MPJ)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:149 - Pro A:150   [ RasMol ]  
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 Related Entries

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UniProtKB/Swiss-Prot
        MDLC_PSEPU | P20906: 1bfd 1mcz 1pi3 1po7 1q6z 1yno 2fn3 2fwn 2v3w 3f6b 3f6e 3fsj 3fzn 4gg1 4gm0 4gm1 4gm4 4gp9 4gpe 4jd5 4ju8 4ju9 4jua 4jub 4juc 4jud 4juf 4k9k 4k9l 4k9m 4k9n 4k9o 4k9p 4mpp 4mpr 4mq5 4mzx 4qel 5dei 5dgd 5dgt

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