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(-) Description

Title :  LAMBDA-[RU(TAP)2(DPPZ-10-ME)]2+ BOUND TO A SYNTHETIC DNA OLIGOMER
 
Authors :  J. P. Hall, C. J. Cardin
Date :  03 Sep 13  (Deposition) - 24 Sep 14  (Release) - 13 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.97
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Methyl-Substituted, Intercalation, Ruthenium, Asymmetric Substitution, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. P. Hall, H. Beer, K. Buchner, D. J. Cardin, C. J. Cardin
The Structural Effect Of Methyl Substitution On The Binding Of Polypyridyl Ru Dppz Complexes To Dna
Organometallics 2015
PubMed: search  |  Reference-DOI: 10.1021/OM501208X

(-) Compounds

Molecule 1 - DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3')
    Chains: A
    Engineered: YES
    Other Details: DNA SYNTHESISED BY ATDBIO
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
12J01Ligand/Ion(10-METHYLDIPYRIDO[3,2-A:2',3'-C]PHENAZINE-KAPPA~2~N~4~,N~5~)[BIS(PYRAZINO[2,3-F]QUINOXALINE-KAPPA~2~N~1~,N~10~)]RUTHENIUM(2+)
2BA1Ligand/IonBARIUM ION
3CL1Ligand/IonCHLORIDE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
12J02Ligand/Ion(10-METHYLDIPYRIDO[3,2-A:2',3'-C]PHENAZINE-KAPPA~2~N~4~,N~5~)[BIS(PYRAZINO[2,3-F]QUINOXALINE-KAPPA~2~N~1~,N~10~)]RUTHENIUM(2+)
2BA-1Ligand/IonBARIUM ION
3CL-1Ligand/IonCHLORIDE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDT A:1 , DC A:2 , DG A:3 , DG A:4 , DC A:5 , DC A:7 , DC A:8 , DG A:9 , DA A:10 , HOH A:296BINDING SITE FOR RESIDUE 2J0 A 101
2AC2SOFTWAREDG A:3 , DG A:4 , HOH A:201 , HOH A:202 , HOH A:203 , HOH A:206 , HOH A:209 , HOH A:219BINDING SITE FOR RESIDUE BA A 102
3AC3SOFTWAREDG A:4 , DC A:5 , HOH A:277BINDING SITE FOR RESIDUE CL A 103

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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(-) Sequences/Alignments

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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:10
                                         
                  4mj9 A  1 TCGGCGCCGA 10
                                    10
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(-) Related Entries Specified in the PDB File

4iii 11-CL DERIVATIVE WITH THE SAME SEQUENCE