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(-) Description

Title :  CRYSTAL STRUCTURE OF GPB IN COMPLEX WITH SUGAR (N-{(2E)-3-[4-(PROPAN-2-YL)PHENYL]PROP-2-ENOYL}-BETA-D-GLUCOPYRANOSYLAMINE) (S6)
 
Authors :  A. L. Kantsadi, D. S. M. Chatzileontiadou, D. D. Leonidas
Date :  30 Aug 13  (Deposition) - 23 Jul 14  (Release) - 15 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Alpha And Beta Protein, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Parmenopoulou, A. L. Kantsadi, V. G. Tsirkone, D. S. Chatzileontiadou, S. Manta, S. E. Zographos, C. Molfeta, G. Archontis, L. Agius, J. M. Hayes, D. D. Leonidas, D. Komiotis
Structure Based Inhibitor Design Targeting Glycogen Phosphorylase B. Virtual Screening, Synthesis, Biochemical And Biological Assessment Of Novel N-Acyl-Beta-D-Glucopyranosylamines.
Bioorg. Med. Chem. V. 22 4810 2014
PubMed-ID: 25092521  |  Reference-DOI: 10.1016/J.BMC.2014.06.058

(-) Compounds

Molecule 1 - GLYCOGEN PHOSPHORYLASE, MUSCLE FORM
    Chains: A
    EC Number: 2.4.1.1
    Organism Common: EUROPEAN RABBIT,JAPANESE WHITE RABBIT,DOMESTIC RABBIT,RABBITS
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Other Details: MUSCLE
    Synonym: MYOPHOSPHORYLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
126Y1Ligand/IonN-{(2E)-3-[4-(PROPAN-2-YL)PHENYL]PROP-2-ENOYL}-BETA-D-GLUCOPYRANOSYLAMINE
2LLP1Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
126Y2Ligand/IonN-{(2E)-3-[4-(PROPAN-2-YL)PHENYL]PROP-2-ENOYL}-BETA-D-GLUCOPYRANOSYLAMINE
2LLP2Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:135 , LEU A:136 , ASN A:282 , ASP A:283 , PHE A:285 , HIS A:341 , HIS A:377 , ASN A:484 , TYR A:573 , GLU A:672 , ALA A:673 , SER A:674 , GLY A:675 , HOH A:1060 , HOH A:1076 , HOH A:1101 , HOH A:1108BINDING SITE FOR RESIDUE 26Y A 901

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MIC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MIC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MIC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MIC)

(-) Exons   (0, 0)

(no "Exon" information available for 4MIC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:807
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee...eeee.hhhhhhhhhhhhhhhhhhhhhh..hhhhhhh....eee..hhhhhhhhhhhhhhhhh...eeeeee.......eeeee..eeeee............ee.hhhheeeeeeeeeeee..eeeeeeeeeeeeeeeeeeee......eeeeeeeeee.....hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhheeeeee.....hhhhhhhhhhhhh...hhhhhhhhhhhheeee....hhhhh.eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.ee.....eeehhhhhhhh...eee.hhhhhhhhhhh.hhhhhhhh...eee.....hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee.......hhhhhhhhhhhhhhhhhhh.......eeeeee......hhhhhhhhhhhhhhhhhhh........eeeeee...hhhhhhhhh....eeee..........hhhhhhhhh..eeee....hhhhhhhhhhhhhhee...hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mic A  12 QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPNDGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMkFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDRFKVFADYEEYVKCQERVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPA 836
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251|      270       280       290       300       310   ||  329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679|      689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       
                                                                                                                                                                                                                                                                         251|                                                  314|                                                                                                                                                                                                                                                                                                                                                                 680-LLP                                                                                                                                                        
                                                                                                                                                                                                                                                                          261                                                   324
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MIC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MIC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MIC)

(-) Gene Ontology  (10, 10)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PYGM_RABIT | P00489: 1a8i 1abb 1axr 1b4d 1bx3 1c50 1c8k 1c8l 1e1y 1fs4 1ftq 1ftw 1fty 1fu4 1fu7 1fu8 1gfz 1gg8 1ggn 1gpa 1gpb 1gpy 1h5u 1hlf 1k06 1k08 1kti 1lwn 1lwo 1noi 1noj 1nok 1p29 1p2b 1p2d 1p2g 1p4g 1p4h 1p4j 1pyg 1uzu 1wut 1wuy 1wv0 1wv1 1ww2 1ww3 1xc7 1xkx 1xl0 1xl1 1z62 1z6p 1z6q 2amv 2f3p 2f3q 2f3s 2f3u 2fet 2ff5 2ffr 2g9q 2g9r 2g9u 2g9v 2gj4 2gm9 2gpa 2gpb 2gpn 2ieg 2iei 2off 2pri 2prj 2pyd 2pyi 2qlm 2qln 2qn1 2qn2 2qn3 2qn7 2qn8 2qn9 2qnb 2qrg 2qrh 2qrm 2qrp 2qrq 2skc 2skd 2ske 3amv 3bcr 3bcs 3bcu 3bd6 3bd7 3bd8 3bda 3cut 3cuu 3cuv 3cuw 3e3l 3e3n 3e3o 3ebo 3ebp 3g2h 3g2i 3g2j 3g2k 3g2l 3g2n 3gpb 3l79 3l7a 3l7b 3l7c 3l7d 3mqf 3mrt 3mrv 3mrx 3ms2 3ms4 3ms7 3msc 3mt7 3mt8 3mt9 3mta 3mtb 3mtd 3nc4 3np7 3np9 3npa 3s0j 3sym 3syr 3t3d 3t3e 3t3g 3t3h 3t3i 3zcp 3zcq 3zcr 3zcs 3zct 3zcu 3zcv 4ctm 4ctn 4cto 4ej2 4eke 4eky 4el0 4el5 4gpb 4mho 4mhs 4mi3 4mi6 4mi9 4mra 4yi3 4yi5 4yua 4z5x 5gpb 5jtt 5jtu 5lrc 5lrd 5lre 5lrf 6gpb 7gpb 8gpb 9gpb

(-) Related Entries Specified in the PDB File

4mho 4mhs 4mi3 4mi6 4mi9