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(-) Description

Title :  CRYSTAL STRUCTURE OF APO-PHUS, A HEME-BINDING PROTEIN FROM PSEUDOMONAS AERUGINOSA
 
Authors :  M. J. Y. Lee, Z. Jia, Montreal-Kingston Bacterial Structural Genom Initiative (Bsgi)
Date :  28 Aug 13  (Deposition) - 05 Mar 14  (Release) - 08 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Host-Pathogen Interactions, Structural Genomics, Montreal-Kingston Bacterial Structural Genomics Initiative, Bsgi, Heme-Trafficking Protein, Heme-Degrading Enzyme, Heme, Hemo, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Lee, D. Schep, B. Mclaughlin, M. Kaufmann, Z. Jia
Structural Analysis And Identification Of Phus As A Heme-Degrading Enzyme From Pseudomonas Aeruginosa.
J. Mol. Biol. V. 426 1936 2014
PubMed-ID: 24560694  |  Reference-DOI: 10.1016/J.JMB.2014.02.013

(-) Compounds

Molecule 1 - HEMIN DEGRADING FACTOR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PHUS
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4MGF)

(-) Sites  (0, 0)

(no "Site" information available for 4MGF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MGF)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Arg A:91 -Glu A:92
2Arg B:91 -Glu B:92

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MGF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MGF)

(-) Exons   (0, 0)

(no "Exon" information available for 4MGF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:342
                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4mgfa_ A: automated matches                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhh.....eeee..hhhhhhhhhhhh.eeeeeee...eeeeeeee...eee.....eeee......eeee...eeeeeeeee...eeeeeeee....eeeeeee....hhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhh...eeee..hhhhhhhhhhhhhh..eeeeeee..eeeeeee....eeee..eeeeee..eeeeee.hhh.eeeeeee......eeeeeee.....eeeeeee........hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mgf A  10 SPAELYRAWQDLRAERPQLRARDAAALLQVSEGELVASRVGIDAVRLRPDWAALLPALGELGPIMALTRNEHCVHERKGPYREVTVSANGQMGLVVSPDIDLRLFLGGWNAVFAIAEETTQRSIQVFDQQGVAVHKVFLAEASDVRAWEPLVERLRAAEQDAVLALHEPRAPAAALVDAQIDAAALREGWAALKDTHHFHALLKKHGAQRTQALRLAGGEWAERLDNGDLAKLFEAAAESGLPIMVFVGNAHCIQIHTGPVCNLKWLDDWFNVLDPEFNLHLKTTGIAELWRVRKPSTDGIVTSWEAFDPDGELIVQLFGARKPGEPERDDWRELAESFKAL 354
                                    19        29        39        49        59        69        79        89        99       109       119       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352  
                                                                                                                                                128|                                                                                                                                                                                                                              
                                                                                                                                                 132                                                                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:341
                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4mgfb_ B: automated matches                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh...hhhhhhhhh..hhhhhhhh.....eeee..hhhhhhhhhhhh.eeeeeee...eeeeeeee...eee.....eeee......eeee...eeeeeeeee......eeeeeeee....eeeeeee....hhhhhhhhhhhhh....................hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhh...eeee..hhhhhhhhhhhhhh..eeeeeee..eeeeeee....eeee..eeeee...eeeeee.hhh.eeeeeee......eeeeeee.....eeeeeee........hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mgf B  14 LYRAWQDLRAERPQLRARDAAALLQVSEGELVASRVGIDAVRLRPDWAALLPALGELGPIMALTRNEHCVHERKGPYREVTVSANGQMGLVVSPDIDLRLFLGGWNAVFAIAEETARGTQRSIQVFDQQGVAVHKVFLAEASDVRAWEPLVERLRAAEQDAVLALHEPRAPAAALVDAQIDAAALREGWAALKDTHHFHALLKKHGAQRTQALRLAGGEWAERLDNGDLAKLFEAAAESGLPIMVFVGNAHCIQIHTGPVCNLKWLDDWFNVLDPEFNLHLKTTGIAELWRVRKPSTDGIVTSWEAFDPDGELIVQLFGARKPGEPERDDWRELAESFKAL 354
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MGF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MGF)

(-) Gene Ontology  (2, 2)

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  Cis Peptide Bonds
    Arg A:91 - Glu A:92   [ RasMol ]  
    Arg B:91 - Glu B:92   [ RasMol ]  
 
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 Related Entries

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UniProtKB/TrEMBL
        O68880_PSEAI | O68880: 4imh 4mf9

(-) Related Entries Specified in the PDB File

4mf9 HEME-BOUND PHUS