Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF CED-4 BOUND CED-3 FRAGMENT
 
Authors :  W. J. Huang, T. Y. Jinag, W. Y. Choi, J. W. Wang, Y. G. Shi
Date :  15 Aug 13  (Deposition) - 23 Oct 13  (Release) - 23 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.40
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D,E,F,G,H  (4x)
Keywords :  Apoptosome, Apoptosis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Huang, T. Jiang, W. Choi, S. Qi, Y. Pang, Q. Hu, Y. Xu, X. Gong, P. D. Jeffrey, J. Wang, Y. Shi
Mechanistic Insights Into Ced-4-Mediated Activation Of Ced-3.
Genes Dev. V. 27 2039 2013
PubMed-ID: 24065769  |  Reference-DOI: 10.1101/GAD.224428.113

(-) Compounds

Molecule 1 - CELL DEATH PROTEIN 4
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CED-4, C35D10.9
    Organism Common: NEMATODE
    Organism Scientific: CAENORHABDITIS ELEGANS
    Organism Taxid: 6239
 
Molecule 2 - CED-3 FRAGMENT
    Chains: E, F, G, H
    Engineered: YES
    Other Details: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (4x): ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 80)

Asymmetric Unit (3, 80)
No.NameCountTypeFull Name
1ATP4Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG4Ligand/IonMAGNESIUM ION
3MSE72Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 304)
No.NameCountTypeFull Name
1ATP16Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3MSE288Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:166 , ASP A:250 , THR A:271 , ATP A:602BINDING SITE FOR RESIDUE MG A 601
2AC2SOFTWAREMSE A:128 , TYR A:131 , GLY A:162 , GLY A:164 , LYS A:165 , SER A:166 , VAL A:167 , ARG A:273 , PHE A:301 , TYR A:305 , PRO A:330 , ALA A:331 , MSE A:334 , PRO A:368 , TYR A:369 , MG A:601BINDING SITE FOR RESIDUE ATP A 602
3AC3SOFTWARESER B:166 , ASP B:250 , ATP B:602BINDING SITE FOR RESIDUE MG B 601
4AC4SOFTWAREMSE B:128 , TYR B:131 , GLY B:162 , GLY B:164 , LYS B:165 , SER B:166 , VAL B:167 , ARG B:273 , PHE B:301 , TYR B:305 , PRO B:330 , ALA B:331 , MSE B:334 , THR B:367 , PRO B:368 , TYR B:369 , MG B:601BINDING SITE FOR RESIDUE ATP B 602
5AC5SOFTWARESER C:166 , LYS C:191 , ATP C:602BINDING SITE FOR RESIDUE MG C 601
6AC6SOFTWAREMSE C:128 , TYR C:131 , GLY C:162 , GLY C:164 , LYS C:165 , SER C:166 , VAL C:167 , ARG C:273 , PHE C:301 , TYR C:305 , PRO C:330 , ALA C:331 , MSE C:334 , THR C:367 , PRO C:368 , TYR C:369 , MG C:601BINDING SITE FOR RESIDUE ATP C 602
7AC7SOFTWARESER D:166 , ASP D:250 , THR D:271 , ATP D:602BINDING SITE FOR RESIDUE MG D 601
8AC8SOFTWAREMSE D:128 , TYR D:131 , GLY D:162 , GLY D:164 , LYS D:165 , SER D:166 , VAL D:167 , ARG D:273 , PHE D:301 , PRO D:330 , ALA D:331 , MSE D:334 , THR D:367 , PRO D:368 , TYR D:369 , MG D:601BINDING SITE FOR RESIDUE ATP D 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4M9Z)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Mse A:449 -Pro A:450
2Mse B:449 -Pro B:450
3Mse C:449 -Pro C:450
4Mse D:449 -Pro D:450
5Phe H:752 -Leu H:753

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M9Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M9Z)

(-) Exons   (0, 0)

(no "Exon" information available for 4M9Z)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:510
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhh...hhhhhhhhhhhhhhhhh...hhhhhhhhhhh..hhhhhhhhhh..........hhhhhhhhhhhhhh......eeeeeee....hhhhhhhhhh............eeeeee......hhhhhhhhhhhhhhh..............hhhhhhhhhhhhh.....eeeeeeee.hhhhhhhhhhh..eeeeee..hhhhhhh...eeeeee...hhhhhhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh.hhhhhhhhhhhhhh.....eehhhhhh.........hhhhhhhhhhhhh.....ee.....ee...hhhhhhhhh..hhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m9z A   1 mLCEIECRALSTAHTRLIHDFEPRDALTYLEGKNIFTEDHSELISKmSTRLERIANFLRIYRRQASELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQmLDRKLLLGNVPKQmTCYIREYHVDRVIKKLDEmCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLmLKSEDDLLNFPSVEHVTSVVLKRmICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGmPmPVGEKEEDVLNKTIELSSGNPATLmmFFKSCEPKTFEKmAQLNNKLESRGLVGVECITPYSYKSLAmALQRCVEVLSDEDRSALAFAVVmPPGVDIPVKLWSCVIPVDEQLDDEVADRLKRLSKRGALLSGKRmPVLTFKIDHIIHmFLKHVVDAQTIANGISILEQRLLEIETVIRPEDFPKFmQLHQKFYDSLKNFACC 549
                            |       10        20        30        40      | 50        60        70        80        90       100       110   |   120       130       140      |150       160       170       180       190       200       210       220       230   |   240       250       260       270       280       290       300      |310       320       330   ||  340       350       360       370     | 380       390       400       410      |426       436       446  |    456     | 466       476       486||     529   |   539       549
                            |                                            47-MSE                                                            114-MSE       128-MSE            147-MSE                                                        210-MSE                 234-MSE                                                                  307-MSE                    334-MSE       348-MSE                     376-MSE                399-MSE           417|                      449-MSE      462-MSE                  487|         533-MSE            
                            1-MSE                                                                                                                                                                                                                                                                                                             309-MSE                   335-MSE                                                                            424                                                             521                            


Chain B from PDB  Type:PROTEIN  Length:511
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.....hhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhh...hhhhhhhhhhhhhhhhh...................hhhhhhh..........hhhhhhhhhhhhhh......eeeeeee....hhhhhhhhhh............eeeeee......hhhhhhhhhhhhhhh..............hhhhhhhhhhhhh.....eeeeeeee.hhhhhhhhhhh..eeeeee..hhhhhhh...eeeeee...hhhhhhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh.hhhhhhhhhhhhhh.....eehhhhhh......hhhhhhhhhhhhh.....ee.....ee...hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m9z B   1 mLCEIECRALSTAHTRLIHDFEPRDALTYLEGKNIFTEDHSELISKmSTRLERIANFLRIYRRQASELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQmLDRKLLLGNVPKQmTCYIREYHVDRVIKKLDEmCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLmLKSEDDLLNFPSVEHVTSVVLKRmICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGmPmPVGEKEEDVLNKTIELSSGNPATLmmFFKSCEPKTFEKmAQLNNKLESRGLVGVECITPYSYKSLAmALQRCVEVLSDEDRSALAFAVVmPPGVDIPVKLWSCVIPVLDDEVADRLKRLSKRGALLSGKRmPVLTFKIDHIIHmFLKHVVDAQTIANGISILEQRLLEIGNNNETVIRPEDFPKFmQLHQKFYDSLKNFACC 549
                            |       10        20        30        40      | 50        60        70        80        90       100       110   |   120       130       140      |150       160       170       180       190       200       210       220       230   |   240       250       260       270       280       290       300      |310       320       330   ||  340       350       360       370     | 380       390       400       410     ||429       439       449       459  |    469       479       489 ||    528    |  538       548 
                            1-MSE                                        47-MSE                                                            114-MSE       128-MSE            147-MSE                                                        210-MSE                 234-MSE                                                                  307-MSE                    334-MSE       348-MSE                     376-MSE                399-MSE          416|                    449-MSE      462-MSE                      491|         533-MSE            
                                                                                                                                                                                                                                                                                                                                              309-MSE                   335-MSE                                                                           426                                                               521                            


Chain C from PDB  Type:PROTEIN  Length:510
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhh...hhhhhhhhhhhhhhhhh.........hhhhh..hhhhhhhhhh..........hhhhhhhhhhhhhh......eeeeeee....hhhhhhhhhh............eeeeee......hhhhhhhhhhhhhhh..............hhhhhhhhhhhhh.....eeeeeeee.hhhhhhhhhhh..eeeeee..hhhhhhh...eeeeee...hhhhhhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhhhhhh....hhhhhhhhhhhh..hhhhhh.........hhhhhhhhhhhh.hhhhhhhhhhhhhh.....eehhhhhh.........hhhhhhhhhhhhh.....ee.....ee...hhhhhhhhh..hhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m9z C   1 mLCEIECRALSTAHTRLIHDFEPRDALTYLEGKNIFTEDHSELISKmSTRLERIANFLRIYRRQASELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQmLDRKLLLGNVPKQmTCYIREYHVDRVIKKLDEmCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLmLKSEDDLLNFPSVEHVTSVVLKRmICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGmPmPVGEKEEDVLNKTIELSSGNPATLmmFFKSCEPKTFEKmAQLNNKLESRGLVGVECITPYSYKSLAmALQRCVEVLSDEDRSALAFAVVmPPGVDIPVKLWSCVIPVDEQLDDEVADRLKRLSKRGALLSGKRmPVLTFKIDHIIHmFLKHVVDAQTIANGISILEQRLLEIETVIRPEDFPKFmQLHQKFYDSLKNFACC 549
                            |       10        20        30        40      | 50        60        70        80        90       100       110   |   120       130       140      |150       160       170       180       190       200       210       220       230   |   240       250       260       270       280       290       300      |310       320       330   ||  340       350       360       370     | 380       390       400       410      |426       436       446  |    456     | 466       476       486||     529   |   539       549
                            1-MSE                                        47-MSE                                                            114-MSE       128-MSE            147-MSE                                                        210-MSE                 234-MSE                                                                  307-MSE                    334-MSE       348-MSE                     376-MSE                399-MSE           417|                      449-MSE      462-MSE                  487|         533-MSE            
                                                                                                                                                                                                                                                                                                                                              309-MSE                   335-MSE                                                                            424                                                             521                            


Chain D from PDB  Type:PROTEIN  Length:511
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh....hhhhhhhhhhh...hhhhhhhh....hhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhh............hhhhhh.hhhhhhh..........hhhhhhhhhhhhhh......eeeeeee....hhhhhhhhhh............eeeeee......hhhhhhhhhhhhhhh..............hhhhhhhhhhhhh.....eeeeeeee.hhhhhhhhhhh..eeeeee..hhhhhhh....eeeee...hhhhhhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh.hhhhhhhhhhhhhh.....eehhhhhh......hhhhhhhhhhhhh.....ee.....ee...hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m9z D   1 mLCEIECRALSTAHTRLIHDFEPRDALTYLEGKNIFTEDHSELISKmSTRLERIANFLRIYRRQASELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQmLDRKLLLGNVPKQmTCYIREYHVDRVIKKLDEmCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLmLKSEDDLLNFPSVEHVTSVVLKRmICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGmPmPVGEKEEDVLNKTIELSSGNPATLmmFFKSCEPKTFEKmAQLNNKLESRGLVGVECITPYSYKSLAmALQRCVEVLSDEDRSALAFAVVmPPGVDIPVKLWSCVIPVLDDEVADRLKRLSKRGALLSGKRmPVLTFKIDHIIHmFLKHVVDAQTIANGISILEQRLLEIGNNNETVIRPEDFPKFmQLHQKFYDSLKNFACC 549
                            |       10        20        30        40      | 50        60        70        80        90       100       110   |   120       130       140      |150       160       170       180       190       200       210       220       230   |   240       250       260       270       280       290       300      |310       320       330   ||  340       350       360       370     | 380       390       400       410     ||429       439       449       459  |    469       479       489 ||    528    |  538       548 
                            1-MSE                                        47-MSE                                                            114-MSE       128-MSE            147-MSE                                                        210-MSE                 234-MSE                                                                  307-MSE                    334-MSE       348-MSE                     376-MSE                399-MSE          416|                    449-MSE      462-MSE                      491|         533-MSE            
                                                                                                                                                                                                                                                                                                                                              309-MSE                   335-MSE                                                                           426                                                               521                            


Chain E from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author .hhhhh Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 4m9z E 749 mFNFLG 754
                            |     
                          749-MSE 


Chain F from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 4m9z F 749 mFNFL 753
                            |    
                            |    
                          749-MSE


Chain G from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 4m9z G 749 mFNFL 753
                            |    
                            |    
                          749-MSE


Chain H from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 4m9z H 748 PmFNFL 753
                             |    
                             |    
                           749-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4M9Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M9Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M9Z)

(-) Gene Ontology  (27, 27)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ATP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Mse A:449 - Pro A:450   [ RasMol ]  
    Mse B:449 - Pro B:450   [ RasMol ]  
    Mse C:449 - Pro C:450   [ RasMol ]  
    Mse D:449 - Pro D:450   [ RasMol ]  
    Phe H:752 - Leu H:753   [ RasMol ]  
 
Biological Unit
  Complete Structure
    Biological Unit 1  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4m9z
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  CED4_CAEEL | P30429
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  CED4_CAEEL | P30429
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CED4_CAEEL | P30429: 2a5y 3lqq 3lqr 4m9s 4m9x 4m9y

(-) Related Entries Specified in the PDB File

4m9s 4m9x 4m9y