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(-) Description

Title :  CRYSTAL STRUCTURE OF ARA H 8 WITH MES BOUND
 
Authors :  L. R. Offermann, B. K. Hurlburt, K. A. Majorek, J. K. Mcbride, S. J. Malek M. Chruszcz
Date :  15 Aug 13  (Deposition) - 27 Nov 13  (Release) - 15 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Bet V 1 Like, Small Molecule Carrier, Plant Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. K. Hurlburt, L. R. Offermann, J. K. Mcbride, K. A. Majorek, S. J. Maleki, M. Chruszcz
Structure And Function Of The Peanut Panallergen Ara H 8.
J. Biol. Chem. V. 288 36890 2013
PubMed-ID: 24253038  |  Reference-DOI: 10.1074/JBC.M113.517797

(-) Compounds

Molecule 1 - ARA H 8 ALLERGEN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-A8
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Common: GOOBER,GROUND-NUT
    Organism Scientific: ARACHIS HYPOGAEA
    Organism Taxid: 3818

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2NA2Ligand/IonSODIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2NA-1Ligand/IonSODIUM ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2NA-1Ligand/IonSODIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:31 , ILE A:34 , ASP A:35 , VAL A:37 , HOH A:323 , HOH A:351BINDING SITE FOR RESIDUE NA A 200
2AC2SOFTWAREPRO B:31 , ILE B:34 , ASP B:35 , VAL B:37 , HOH B:304 , HOH B:309BINDING SITE FOR RESIDUE NA B 201
3AC3SOFTWAREMET B:23 , LYS B:53 , HIS B:68 , TYR B:80 , TYR B:82 , LEU B:142 , ILE B:146 , HOH B:305 , HOH B:320BINDING SITE FOR RESIDUE MES B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4M9W)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4M9W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M9W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M9W)

(-) Exons   (0, 0)

(no "Exon" information available for 4M9W)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains d4m9wa_ A: automated matches                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeee..hhhhhhhhhhhhhhhhhhhh..eeeeeeee.......eeeeeeee..eeeeeeeeeeeeehhh.eeeeeeee.......eeeeeeeeeeee.hhh.eeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m9w A   2 GVFTFEDEITSTVPPAKLYNAMKDADSITPKIIDDVKSVEIVEGNGGPGTIKKLTIVEDGETKFILHKVESIDEANYAYNYSVVGGVALPPTAEKITFETKLVEGPNGGSIGKLTLKYHTKGDAKPDEEELKKGKAKGEGLFRAIEGYVLANPTQY 157
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151      


Chain B from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains d4m9wb_ B: automated matches                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeee..hhhhhhhhhhhhhhhhhhhh..eeeeeeee.......eeeeeeee..eeeeeeeeeeeeehhh.eeeeeeeee......eeeeeeeeeeee.hhh.eeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m9w B   2 GVFTFEDEITSTVPPAKLYNAMKDADSITPKIIDDVKSVEIVEGNGGPGTIKKLTIVEDGETKFILHKVESIDEANYAYNYSVVGGVALPPTAEKITFETKLVEGPNGGSIGKLTLKYHTKGDAKPDEEELKKGKAKGEGLFRAIEGYVLANPTQY 157
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M9W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M9W)

(-) Gene Ontology  (2, 2)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q6VT83_ARAHY | Q6VT83: 4m9b 4ma6 4map

(-) Related Entries Specified in the PDB File

4m9b CRYSTAL STRUCTURE OF APO ARA H 8
4ma6 CRYSTAL STRUCTURE OF APO ARA H 8 WITH EPICATECHIN BOUND
4map