4M7F - JenaLib

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Title :   CRYSTAL STRUCTURE OF TETRAMERIC FIBRINOGEN-LIKE RECOGNITION DOMAIN OF FIBCD1 WITH BOUND MANNAC

Authors :   A. K. Shrive, T. J. Greenhough, U. Holmskov

Date :   12 Aug 13 (Deposition) - 11 Dec 13 (Release) - 19 Feb 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (4x)
Biol. Unit 2: B  (4x)

Keywords :   Fibrinogen-Like Domain, N-Acetyl-Binding Protein, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. K. Shrive, J. B. Moeller, I. Burns, J. M. Paterson, A. J. Shaw, A. Schlosser, G. L. Sorensen, T. J. Greenhough, U. Holmskov
Crystal Structure Of The Tetrameric Fibrinogen-Like Recognition Domain Of Fibrinogen C Domain Containing 1 (Fibcd1) Protein.
J. Biol. Chem. V. 289 2880 2014
PubMed-ID: 24293368 | Reference-DOI: 10.1074/JBC.M113.520577

Molecule 1 - FIBRINOGEN C DOMAIN-CONTAINING PROTEIN 1
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Taxid	:	7108
	Fragment	:	FIBCD1 FIBRINOGEN RELATED DOMAIN (UNP RESIDUES 236-461)
	Gene	:	FIBCD1, UNQ701/PRO1346
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (4x)	:	A
Biological Unit 2 (4x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 7)

No.	Name	Count	Type	Full Name
1	BM3	2	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MANNOPYRANOSE
2	CA	2	Ligand/Ion	CALCIUM ION
3	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 12)

No.	Name	Count	Type	Full Name
1	BM3	4	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MANNOPYRANOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 8)

No.	Name	Count	Type	Full Name
1	BM3	4	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MANNOPYRANOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	NAG	-1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	SO4	4	Ligand/Ion	SULFATE ION

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:393 , ASP A:395 , SER A:397 , ASN A:399 , HOH A:606 , HOH A:629	BINDING SITE FOR RESIDUE CA A 501
2	AC2	SOFTWARE	TYR A:405 , ASN A:413 , CYS A:414 , HIS A:415 , TYR A:431 , TRP A:443	BINDING SITE FOR RESIDUE BM3 A 503
3	AC3	SOFTWARE	ARG A:297 , GLY A:298 , LYS A:390 , HOH A:689	BINDING SITE FOR RESIDUE SO4 A 504
4	AC4	SOFTWARE	ASP B:393 , ASP B:395 , SER B:397 , ASN B:399 , HOH B:604 , HOH B:680	BINDING SITE FOR RESIDUE CA B 501
5	AC5	SOFTWARE	ASN A:340 , TYR B:405 , ASN B:413 , CYS B:414 , HIS B:415 , TYR B:431 , ALA B:432 , TRP B:443 , HOH B:693	BINDING SITE FOR RESIDUE BM3 B 502
6	AC6	SOFTWARE	ARG B:297 , GLY B:298 , LYS B:390 , HOH B:610 , HOH B:758	BINDING SITE FOR RESIDUE SO4 B 503
7	AC7	SOFTWARE	ASN A:340 , HOH A:715 , GLU B:398 , ASN B:413	BINDING SITE FOR MONO-SACCHARIDE NAG A 502 BOUND TO ASN A 340

Asymmetric Unit

No.	Residues
1	A:244	-	A:273
2	A:401	-	A:414
3	B:244	-	B:273
4	B:401	-	B:414

Asymmetric Unit

No.	Residues
1	Asn A:413	-	Cys A:414
2	Asn B:413	-	Cys B:414

(no "SAP(SNP)/Variant" information available for 4M7F)

(no "PROSITE Motif" information available for 4M7F)

(no "Exon" information available for 4M7F)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                            
               SCOP domains d4m7fa_ A: automated matches                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh.....eeeee........eeeeee.hhhhh.eeeeeee.........hhhhhhhhee.....ee.hhhhhhhhhh...eeeeeeee.....eeeeeeeeeee.............eeeeeeee.....hhhhh................hhhhhh...........ee.......ee........eehhhhh..ee..eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m7f A 239 SRPRDCLDVLLSGQQDDGVYSVFPTHYPAGFQVYCDMRTDGGGWTVFQRREDGSVNFFRGWDAYRDGFGRLTGEHWLGLKRIHALTTQAAYELHVDLEDFENGTAYARYGSFGVGLFSVDPEEDGYPLTVADYSGTAGDSLLKHSGMRFTTKDRDSDHSENNCAAFYRGAWWYRNCHTSNLNGQYLRGAHASYADGVEWSSWTGWQYSLKFSEMKIRPVR 458
                                   248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458

Chain B from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains d4m7fb_ B: automated matches                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh.....eeeee........eeeeee.hhhhh.eeeeeee.........hhhhhhhhee.....ee.hhhhhhhhhh...eeeeeeee.....eeeeeeeeeee.............eeeeeeee.....hhhhh................hhhhhh...........ee.......ee........eehhhhh..ee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m7f B 239 SRPRDCLDVLLSGQQDDGVYSVFPTHYPAGFQVYCDMRTDGGGWTVFQRREDGSVNFFRGWDAYRDGFGRLTGEHWLGLKRIHALTTQAAYELHVDLEDFENGTAYARYGSFGVGLFSVDPEEDGYPLTVADYSGTAGDSLLKHSGMRFTTKDRDSDHSENNCAAFYRGAWWYRNCHTSNLNGQYLRGAHASYADGVEWSSWTGWQYSLKFSEMKIRPV 457
                                   248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

)

Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a+b) (23004)

Fold: Fibrinogen C-terminal domain-like (70)

Superfamily: Fibrinogen C-terminal domain-like (70)

Family: automated matches (27)

Protein domain: automated matches (27)

Human (Homo sapiens) [TaxId: 9606] (27)

1a	d4m7fa_	A:
1b	d4m7fb_	B:

(no "CATH Domain" information available for 4M7F)

(no "Pfam Domain" information available for 4M7F)

Asymmetric Unit(hide GO term definitions)

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	Ligands, Modified Residues, Ions
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		AC7	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Asn A:413 - Cys A:414	[ RasMol ]
		Asn B:413 - Cys B:414	[ RasMol ]

Biological Units
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		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	FBCD1_HUMAN \| Q8N539	:	4m7h

1jc9	TACHYLECTIN 5A
4m7h	NATIVE TETRAMERIC FIBRINOGEN-LIKE DOMAIN OF FIBCD1

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 7)

Sites (7, 7)

SS Bonds (4, 4)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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