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(-) Description

Title :  OYE2.6 Y78W, I113C
 
Authors :  B. Sullivan, J. D. Stewart
Date :  08 Aug 13  (Deposition) - 25 Jun 14  (Release) - 29 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Tim Barrel, Alkene Reductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Z. Walton, B. Sullivan, A. C. Patterson-Orazem, J. D. Stewart
Residues Controlling Facial Selectivity In An Alkene Reductase And Semirational Alterations To Create Stereocomplementary Variants.
Acs Catalysis V. 4 2307 2014
PubMed-ID: 25068071  |  Reference-DOI: 10.1021/CS500429K

(-) Compounds

Molecule 1 - NADPH DEHYDROGENASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBS3
    Expression System Strain: BL21-GOLD (DE3)
    Expression System Taxid: 511693
    Expression System Vector Type: PET26B(+)
    Gene: OYE2.6, PICST_44614
    Mutation: YES
    Organism Common: YEAST
    Organism Scientific: SCHEFFERSOMYCES STIPITIS
    Organism Taxid: 322104
    Strain: CBS 6054

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 9)

Asymmetric Unit (5, 9)
No.NameCountTypeFull Name
123W1Ligand/IonMETHYL 2-(HYDROXYMETHYL)PROP-2-ENOATE
2CSD1Mod. Amino Acid3-SULFINOALANINE
3FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
4MLA3Ligand/IonMALONIC ACID
5NA3Ligand/IonSODIUM ION
Biological Unit 1 (4, 12)
No.NameCountTypeFull Name
123W2Ligand/IonMETHYL 2-(HYDROXYMETHYL)PROP-2-ENOATE
2CSD2Mod. Amino Acid3-SULFINOALANINE
3FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
4MLA6Ligand/IonMALONIC ACID
5NA-1Ligand/IonSODIUM ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:32 , PRO A:33 , THR A:34 , THR A:35 , ALA A:68 , GLN A:111 , HIS A:188 , HIS A:191 , ARG A:240 , GLY A:292 , ASN A:321 , PHE A:345 , SER A:346 , ARG A:347 , PHE A:373 , TYR A:374 , MLA A:507 , 23W A:508 , HOH A:632 , HOH A:633 , HOH A:635 , HOH A:661BINDING SITE FOR RESIDUE FMN A 501
2AC2SOFTWAREGLU A:41 , HIS A:43 , SER A:76 , VAL A:123 , ARG A:127 , HOH A:697 , HOH A:878 , HOH A:1031 , HOH A:1074BINDING SITE FOR RESIDUE MLA A 502
3AC3SOFTWAREARG A:347 , TYR A:368 , ARG A:370 , TYR A:379 , LYS A:393 , HOH A:663 , HOH A:729 , HOH A:911 , HOH A:1131BINDING SITE FOR RESIDUE MLA A 503
4AC4SOFTWAREGLN A:26 , ASN A:104 , NA A:506 , HOH A:649 , HOH A:671 , HOH A:765 , HOH A:822BINDING SITE FOR RESIDUE NA A 504
5AC5SOFTWAREASP A:335 , ASP A:338 , THR A:341 , HOH A:682 , HOH A:858BINDING SITE FOR RESIDUE NA A 505
6AC6SOFTWARETHR A:58 , ASN A:104 , NA A:504 , HOH A:822 , HOH A:947 , HOH A:1087BINDING SITE FOR RESIDUE NA A 506
7AC7SOFTWAREHIS A:188 , HIS A:191 , TYR A:193 , ASN A:293 , TYR A:374 , FMN A:501BINDING SITE FOR RESIDUE MLA A 507
8AC8SOFTWARETHR A:35 , ALA A:68 , TRP A:78 , CSD A:113 , HIS A:188 , HIS A:191 , TYR A:193 , GLY A:292 , ASN A:293 , TYR A:374 , FMN A:501 , HOH A:1140BINDING SITE FOR RESIDUE 23W A 508

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4M5P)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:326 -Pro A:327

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M5P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M5P)

(-) Exons   (0, 0)

(no "Exon" information available for 4M5P)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:405
                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhh.eee..eee...ee...............hhhhhhhhhhh......eee...ee.hhhhh..........hhhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhh....ee......hhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhh............hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.....eeeee...ee..ee.........hhhhhhhh..eeeee.hhhhhh..hhhhhhhhh...eeee.hhhhhhh.hhhhhhhhh......hhhhh.......hhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m5p A   2 SSVKISPLKDSEAFQSIKVGNNTLQTKIVYPPTTRFRALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQASGWEGAAPGIWTDKHAKAWKVITDKVHANGSFVSTQLcCFLGRVADPAVMKTRGLNPVSASATYESDAAKEAAEAVGNPVRALTTQEVKDLVYEAYTNAAQKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEFVSKIWKGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLRDGIDLVPYDRNTFYSDNNYGYNTFSMDSEEVDKELEIKRVPSAIE 405
                                    11        21        31        41        51        61        71        81        91       101       111 |     120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400     
                                                                                                                                         113-CSD
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4M5P)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M5P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M5P)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)

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    Ala A:326 - Pro A:327   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A3LT82_PICST | A3LT82: 3tjl 3upw 4df2 4qai

(-) Related Entries Specified in the PDB File

3tjl OYE2.6 WILD TYPE