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(-) Description

Title :  STRUCTURE OF A SINGLE-DOMAIN CAMELID ANTIBODY FRAGMENT CAB-H7S SPECIFIC OF THE BLAP BETA-LACTAMASE FROM BACILLUS LICHENIFORMIS
 
Authors :  C. Pain, F. Kerff, R. Herman, E. Sauvage, S. Preumont, P. Charlier, M. Du
Date :  06 Aug 13  (Deposition) - 06 Aug 14  (Release) - 06 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Immunoglobulin Fold, Antigen Binding, Beta-Lactamase Binding Antibody, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Pain, A. Cosolo, S. Preumont, N. Scarafone, D. Thorn, R. Herman, H. Spiegel, E. Pardon, A. Matagne, P. Charlier, J. Steyaert, C. Damblon, F. Kerff, G. Esposito, M. Dumoulin
Probing The Mechanism Of Aggregation Of Polyq Model Protein With Camelid Heavy-Chain Antibody Fragments
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CAMELID HEAVY-CHAIN ANTIBODY VARIABLE FRAGMENT CAB-H7S
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMES4
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: LAMA GLAMA
    Organism Taxid: 9844

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:71 , HOH A:304 , LYS B:64BINDING SITE FOR RESIDUE SO4 A 201
2AC2SOFTWARELYS A:64 , ARG B:71 , HOH B:301BINDING SITE FOR RESIDUE SO4 B 201

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:22 -A:95
2B:22 -B:95

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4M3J)

 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:116
                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.eee.....eeeeeeeee....eeeeeeeee..eeeeeee....eee........eeeeehhh.eeeeee...hhhhheeeeeeeeee.....eeeee...eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 4m3j A   1 QVQLQESGGGLVQPGGSLRLSCAASGSISSITTMGWYRQGRELVALINSVGDTTYAGSVKGRFTISRDNAKNTVYLEMSSLKPEDTAVYYCNAFMSTNSGRTGSFWGQGTQVTVSS 120
                                    10        20        30        44        54        64        74        84        94       104       114      
                                                                 39|                                                                            
                                                                  44                                                                            


Chain B from PDB  Type:PROTEIN  Length:119
                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eee.....eeeeeeeee.hhhh.eeeeeee......eeeeeee....eee.......eeeeee....eeeeee...hhhhheeeeeeeeee.....eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 4m3j B   1 QVQLQESGGGLVQPGGSLRLSCAASGSISSITTMGWYRQDPGKGRELVALINSVGDTTYAGSVKGRFTISRDNAKNTVYLEMSSLKPEDTAVYYCNAFMSTNSGRTGSFWGQGTQVTVS 119
                                    10        20        30        40        50        60        70        80        90       100       110
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4M3J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M3J)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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4m3k