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(-) Description

Title :  CRYSTAL STRUCTURE OF SMALL LACCASE SSL1 FROM STREPTOMYCES SVICEUS
 
Authors :  M. Gunne, A. Hoeppner, P. -L. Hagedoorn, V. B. Urlacher
Date :  06 Aug 13  (Deposition) - 19 Mar 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Two-Domain Laccase, Homotrimer, Multicopper Oxidase, Metalloprotein, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Gunne, A. Hoppner, P. L. Hagedoorn, V. B. Urlacher
Structural And Redox Properties Of The Small Laccase Ssl1 From Streptomyces Sviceus.
Febs J. V. 281 4307 2014
PubMed-ID: 24548692  |  Reference-DOI: 10.1111/FEBS.12755

(-) Compounds

Molecule 1 - COPPER OXIDASE
    Chains: A, B, C
    EC Number: 1.10.3.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 8-325
    Gene: SSEG_02446
    Organism Scientific: STREPTOMYCES SVICEUS
    Organism Taxid: 285530
    Strain: DMS 924
    Synonym: LACCASE

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric/Biological Unit (2, 13)
No.NameCountTypeFull Name
1CU11Ligand/IonCOPPER (II) ION
2O2Ligand/IonOXYGEN ATOM

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:228 , CYS A:285 , HIS A:290 , MET A:295BINDING SITE FOR RESIDUE CU A 401
02AC2SOFTWAREHIS A:233 , HIS A:284 , HIS C:155BINDING SITE FOR RESIDUE CU A 402
03AC3SOFTWAREHIS A:99 , HIS A:101 , HIS A:153 , CU A:404 , HIS B:286 , O B:403BINDING SITE FOR RESIDUE CU A 403
04AC4SOFTWAREHIS A:99 , HIS A:153 , HIS A:155 , CU A:403 , HIS B:233 , HIS B:286 , CU B:402BINDING SITE FOR RESIDUE CU A 404
05AC5SOFTWAREHIS B:228 , CYS B:285 , HIS B:290 , MET B:295BINDING SITE FOR RESIDUE CU B 401
06AC6SOFTWAREHIS A:155 , CU A:404 , HIS B:233 , HIS B:284 , O B:403BINDING SITE FOR RESIDUE CU B 402
07AC7SOFTWAREHIS A:155 , CU A:403 , HIS B:231 , HIS B:284 , HIS B:286 , CU B:402BINDING SITE FOR RESIDUE O B 403
08AC8SOFTWAREHIS B:99 , HIS B:101 , HIS B:153 , CU B:405 , O B:406 , HIS C:286BINDING SITE FOR RESIDUE CU B 404
09AC9SOFTWAREHIS B:99 , HIS B:101 , HIS B:153 , CU B:404 , HIS C:286 , CU C:403BINDING SITE FOR RESIDUE CU B 405
10BC1SOFTWAREHIS B:99 , HIS B:155 , CU B:404 , HIS C:233 , HIS C:284 , HIS C:286 , CU C:403BINDING SITE FOR RESIDUE O B 406
11BC2SOFTWAREHIS A:286 , HIS C:99 , HIS C:101 , HIS C:153BINDING SITE FOR RESIDUE CU C 401
12BC3SOFTWAREHIS C:228 , CYS C:285 , HIS C:290 , MET C:295BINDING SITE FOR RESIDUE CU C 402
13BC4SOFTWAREHIS B:155 , CU B:405 , O B:406 , HIS C:233 , HIS C:284BINDING SITE FOR RESIDUE CU C 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4M3H)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Ile A:71 -Pro A:72
2Gly A:205 -Pro A:206
3Ile B:71 -Pro B:72
4Gly B:205 -Pro B:206
5Gly C:42 -Gly C:43
6Ile C:71 -Pro C:72
7Gly C:205 -Pro C:206
8Pro C:309 -Gly C:310

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M3H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M3H)

(-) Exons   (0, 0)

(no "Exon" information available for 4M3H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee.hhh.eeee............eeee...eeeeeeee........ee.....hhhhh.............eeeeeee....ee.....ee....eeeeee........hhhhhhhh.eeeeeee........eeeeeeee..ee.........eeeee...eeeeeeeee....eeeee....ee...............ee.eeee....eeeeeee.......eeeeeee.hhhhhhh..eeeeeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m3h A  43 GEVRRIKLYAERLADGQMGYGLEKGRATIPGPLIELNEGDTLHIEFENTMDVRASLHVHGLDYEVSSDGTTLNKSDVEPGGTRTYTWRTHAPGRRSDGTWRAGSAGYWHYHDHVVGTEHGTGGIRKGLYGPVIVRRKGDVLPDATHTIVFNDMLINNRPAHSGPNFEATVGDRVEFVMITHGEYYHTFHMHGHRWADNRTGMLTGPDDPSQVVDNKIVGPADSFGFQVIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKTDGTIPGY 311
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302         


Chain B from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee...eeeee.....ee.....eeee...eeeeeeee........ee.....hhhhh.hhhhh.......eeeeeee....ee.....ee....eeeeee........hhhhhhhh.eeeeeee........eeeeeeee..ee.........eeeee...eeeeeeeee....eeeee....ee...............ee.eeee....eeeeeee.......eeeeeee.hhhhhhh..eeeeeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m3h B  43 GEVRRIKLYAERLADGQMGYGLEKGRATIPGPLIELNEGDTLHIEFENTMDVRASLHVHGLDYEVSSDGTTLNKSDVEPGGTRTYTWRTHAPGRRSDGTWRAGSAGYWHYHDHVVGTEHGTGGIRKGLYGPVIVRRKGDVLPDATHTIVFNDMLINNRPAHSGPNFEATVGDRVEFVMITHGEYYHTFHMHGHRWADNRTGMLTGPDDPSQVVDNKIVGPADSFGFQVIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKTDGTIPGY 311
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302         


Chain C from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeee.....eeee............eeee...eeeeeeee........ee.....hhhhh.............eeeeeee....ee.....ee....eeeeee........hhhhhhhh.eeeeeee........eeeeeeee..ee..........eeee...eeeeeeeee....eeeee....ee...............ee.eeee....eeeeeee.......eeeeeee.hhhhhhh..eeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m3h C  42 GGEVRRIKLYAERLADGQMGYGLEKGRATIPGPLIELNEGDTLHIEFENTMDVRASLHVHGLDYEVSSDGTTLNKSDVEPGGTRTYTWRTHAPGRRSDGTWRAGSAGYWHYHDHVVGTEHGTGGIRKGLYGPVIVRRKGDVLPDATHTIVFNDMLINNRPAHSGPNFEATVGDRVEFVMITHGEYYHTFHMHGHRWADNRTGMLTGPDDPSQVVDNKIVGPADSFGFQVIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKTDGTIPGY 311
                                    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4M3H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M3H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M3H)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:205 - Pro A:206   [ RasMol ]  
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