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(-) Description

Title :  STRUCTURE OF THE TIR DOMAIN OF THE IMMUNOSUPPRESSOR BTPA FROM BRUCELLA
 
Authors :  B. Kaplan-Turkoz, D. O'Callaghan, A. Vergunst, L. Terradot
Date :  01 Aug 13  (Deposition) - 06 Nov 13  (Release) - 06 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.15
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Tir Domain, Virulence Factor Immuno Suppressor, Myd88, Membrane, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Kaplan-Turkoz, T. Koelblen, C. Felix, M. P. Candusso, D. O'Callaghan, A. C. Vergunst, L. Terradot
Structure Of The Toll/Interleukin 1 Receptor (Tir) Domain O The Immunosuppressive Brucella Effector Btpa/Btp1/Tcpb
Febs Lett. V. 587 3412 2013
PubMed-ID: 24076024  |  Reference-DOI: 10.1016/J.FEBSLET.2013.09.007

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: B, C, A, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PET151
    Gene: BMEA_A0279
    Organism Scientific: BRUCELLA MELITENSIS
    Organism Taxid: 546272
    Strain: ATCC 23457

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4LZP)

(-) Sites  (0, 0)

(no "Site" information available for 4LZP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LZP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LZP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LZP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LZP)

(-) Exons   (0, 0)

(no "Exon" information available for 4LZP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhhhh...ee....ee....hhhhhhhhhhh.eeeeeeeehhhhhh...hhhhhhh.....eeeee...hhhhhhhhhhhhhhh..ee....hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lzp A 100 QAVKKVAQEQKRLSDERTKHEAFIKQSLSSMRTTEEYDFFISHASEDKEAFVQDLVAALRDLGAKIFYDAYTLKVGDSLRRKIDQGLANSKFGIVVLSEHFFSKQWPARELDGLTQTRILPIWHKVSYDEVRRFSPSLADKVALNTSLKSVEEIAKELHSLI 275
                                   109       119       129   ||  147       157       167       177       187       197       207       217    || 233       243       253       263       273  
                                                           133|                                                                             222|                                              
                                                            142                                                                              229                                              


Chain B from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee........hhhhhhhhhhhh...eehhhhh.....hhhhhhhhhhhheeeeeeeehhhhhhh..hhhhhh........eeeee...hhhhhhh.hhhhhhh..ee....hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lzp B 143 EYDFFISHASEDKEAFVQDLVAALRDLGAKIFYDAYTLKVGDSLRRKIDQGLANSKFGIVVLSEHFFSKQWPARELDGLTAGQTRILPIWHKVSYDEVRRFSPSLADKVALNTSLKSVEEIAKELHSLI 275
                                   152       162       172       182       192       202       212       222||     236       246       256       266         
                                                                                                          223|                                               
                                                                                                           228                                               


Chain C from PDB  Type:PROTEIN  Length:163
                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee........hhhhhhhhhhhhh..eehhhhh.....hhhhhhhhhhh.eeeeeeeehhhhhh...hhhhhhhh....eeeee...hhhhhhhhhhhhhhh..ee....hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lzp C 100 QAVKKVAQEQKRLSDERTKHEAFIKQSLSSMRTTEEEYDFFISHASEDKEAFVQDLVAALRDLGAKIFYDAYTLKVGDSLRRKIDQGLANSKFGIVVLSEHFFSKQWPARELDGLTQTRILPIWHKVSYDEVRRFSPSLADKVALNTSLKSVEEIAKELHSLI 275
                                   109       119       129   ||  146       156       166       176       186       196       206       216     ||232       242       252       262       272   
                                                           133|                                                                              222|                                              
                                                            141                                                                               229                                              


Chain D from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee......hhhhhhhhhhh....eehhh.ee....hhhhhhhhhhhheeeeeeeehhhhhh...hhhhhh.......eeeee...hhhhhhh.hhhhhhh..ee....hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lzp D 141 EEEYDFFISHASEDKEAFVQDLVAALRDLGAKIFYDAYTLKVGDSLRRKIDQGLANSKFGIVVLSEHFFSKQWPARELDGLTAQTRILPIWHKVSYDEVRRFSPSLADKVALNTSLKSVEEIAKELHSLI 275
                                   150       160       170       180       190       200       210       220  ||   235       245       255       265       275
                                                                                                            223|                                              
                                                                                                             229
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LZP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LZP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LZP)

(-) Gene Ontology  (1, 1)

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 Related Entries

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(-) Related Entries Specified in the PDB File

3h16 PDTIR FROM PARACOCCUS DENITRIFICANS