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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN PRS1 D65N MUTANT
 
Authors :  P. Chen, M. Teng, X. Li
Date :  31 Jul 13  (Deposition) - 04 Feb 15  (Release) - 25 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.14
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Prs1, Prpp Synthesis Enzyme, Atp R5P, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Chen, Z. Liu, X. Wang, J. Peng, Q. Sun, J. Li, M. Wang, L. Niu, Z. Zhang, G. Cai, M. Teng, X. Li
Crystal And Em Structures Of Human Phosphoribosyl Pyrophosphate Synthase I (Prs1) Provide Novel Insights Into The Disease-Associated Mutations
Plos One V. 10 20304 2015
PubMed-ID: 25781187  |  Reference-DOI: 10.1371/JOURNAL.PONE.0120304

(-) Compounds

Molecule 1 - RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1
    Chains: B, A
    EC Number: 2.7.6.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PRPS1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PPRIBP, PHOSPHORIBOSYL PYROPHOSPHATE SYNTHASE I, PRS-I

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1SO46Ligand/IonSULFATE ION
Biological Unit 1 (1, 18)
No.NameCountTypeFull Name
1SO418Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:104 , SER B:47 , ARG B:49 , SER B:308 , VAL B:309 , SER B:310 , HOH B:507BINDING SITE FOR RESIDUE SO4 B 401
2AC2SOFTWAREASP B:224 , THR B:225 , CYS B:226 , GLY B:227 , THR B:228BINDING SITE FOR RESIDUE SO4 B 402
3AC3SOFTWARELYS A:99 , LYS A:100 , ASP A:101 , LYS A:102 , SER B:132 , GLN B:135 , ASN B:144 , TYR B:146 , HOH B:503 , HOH B:523BINDING SITE FOR RESIDUE SO4 B 403
4AC4SOFTWARESER A:47 , ARG A:49 , SER A:308 , VAL A:309 , SER A:310 , HOH A:1107 , HOH A:1121 , ARG B:104BINDING SITE FOR RESIDUE SO4 A 1001
5AC5SOFTWAREALA A:223 , ASP A:224 , THR A:225 , CYS A:226 , GLY A:227 , THR A:228BINDING SITE FOR RESIDUE SO4 A 1002
6AC6SOFTWARESER A:132 , GLN A:135 , ASN A:144 , TYR A:146 , HOH A:1117 , LYS B:100 , ASP B:101 , LYS B:102BINDING SITE FOR RESIDUE SO4 A 1003

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LZN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LZN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LZN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LZN)

(-) Exons   (0, 0)

(no "Exon" information available for 4LZN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhh.........ee.....ee..........eeeee.....hhhhhhhhhhhhhhhhhhh...eeeeee.................hhhhhhhhhhhhhh..eeeee...hhhhhhhh...eeee.hhhhhhhhhhhhh.hhhh.eeee.hhhhhhhhhhhhhhhh.eeeeeee...eeee.......eeeeeeee..hhhhhhhhhhhhhh....eeeeeeee....hhhhhhhh....eeeee....hhhhhh....eeee.hhhhhhhhhhhhhhh..hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lzn A   3 NIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINNNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKEDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGESVSYLF 313
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192  ||   209       219       229       239       249       259       269       279       289       299       309    
                                                                                                                                                                                                                          195|                                                                                                              
                                                                                                                                                                                                                           203                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhh............................eeeee.....hhhhhhhhhhhhhhhhhhh...eeeeee.................hhhhhhhhhhhhhh..eeeee...hhhhhhhh...eeee.hhhhhhhhhhhhh.hhhh.eeee.hhhhhhhhhhhhhhhh.eeeeeee...eeee.......eeeeeeee..hhhhhhhhhhhhhh....eeeeeeee....hhhhhhhhh...eeeee....hhhhhhh...eeee.hhhhhhhhhhhhhhh..hhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lzn B   3 NIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINNNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKEDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVP 317
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192  ||   209       219       229       239       249       259       269       279       289       299       309        
                                                                                                                                                                                                                          195|                                                                                                                  
                                                                                                                                                                                                                           203
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LZN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LZN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LZN)

(-) Gene Ontology  (30, 30)

Asymmetric Unit(hide GO term definitions)

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  4lzn
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  PRPS1_HUMAN | P60891
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  2.7.6.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PRPS1_HUMAN | P60891: 2h06 2h07 2h08 2hcr 3efh 3s5j 4f8e 4lyg 4lzo 4m0p 4m0u

(-) Related Entries Specified in the PDB File

4lyg 4lzo 4m0p 4m0u