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(-) Description

Title :  CRYSTAL STRUCTURE OF IFI202 HINA DOMAIN IN COMPLEX WITH 20BP DSDNA
 
Authors :  H. Li, Z. -X. Wang, J. -W. Wu
Date :  12 Jul 13  (Deposition) - 08 Jan 14  (Release) - 12 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Ob Fold, Dna Binding, Dna Binding Protein-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Li, J. Wang, J. Wang, L. S. Cao, Z. X. Wang, J. W. Wu
Structural Mechanism Of Dna Recognition By The P202 Hina Domain: Insights Into The Inhibition Of Aim2-Mediated Inflammatory Signalling.
Acta Crystallogr F Struct V. 70 21 2014 Biol Commun
PubMed-ID: 24419611  |  Reference-DOI: 10.1107/S2053230X1303135X

(-) Compounds

Molecule 1 - INTERFERON-ACTIVABLE PROTEIN 202
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETDUET-1
    Expression System Strain: JM109(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 53-245
    Gene: IFI202, IFI202A, IFI202B
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: IFI-202, INTERFERON-INDUCIBLE PROTEIN P202, LUPUS SUSCEPTIBILITY PROTEIN P202
 
Molecule 2 - 20BP DNA
    Chains: C, D
    Engineered: YES
    Other Details: DSDNA(5'-CCATCAAAGATCTTTGATGG-3')
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4LNQ)

(-) Sites  (0, 0)

(no "Site" information available for 4LNQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LNQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LNQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LNQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LNQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4LNQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee...eeeeeeee.............eeeeee....eeeeee.hhhhh.......eeeee.eeee..eeee....eeee.hhhhh...hhhhhhhhhh..hhhhhh......eeeeeeeeeeeee....eeeeee....eeeeee.............eeeeeeeeee......eee.....eeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lnq A  49 GPHMKGAVLHEKPMTVMVLTATEPFNYKEGKENMFHATVATESKYYRVKVFNMDLKEKFTENKFITISKYFNSSGILEINETATVSEAAPNQMFEVPKNIIRSAKETLKISKIKELDSGTLIYGVFAVEKKKVNDKSITFKIKDNEDNIKVVWDKEQHNINYEKGDKLQLFSFHLRKGNGKPILHSGNHSFIKGE 243
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238     


Chain B from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee...eeeeeeee.............eeeeee....eeeeee.hhhhhhhh....eeeee.eeee..eeee....eeee.hhhhh...hhhhhhhhhh..hhhhhh......eeeeeeeeeeeee....eeeeee....eeeeee.............eeeeeeeeeehhhhh.eee.....eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lnq B  54 GAVLHEKPMTVMVLTATEPFNYKEGKENMFHATVATESKYYRVKVFNMDLKEKFTENKFITISKYFNSSGILEINETATVSEAAPNQMFEVPKNIIRSAKETLKISKIKELDSGTLIYGVFAVEKKKVNDKSITFKIKDNEDNIKVVWDKEQHNINYEKGDKLQLFSFHLRKGNGKPILHSGNHSFIKGEKL 245
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243  


Chain C from PDB  Type:DNA  Length:20
                                                    
                 4lnq C   1 CCATCAAAGATCTTTGATGG  20
                                    10        20


Chain D from PDB  Type:DNA  Length:20
                                                    
                 4lnq D   1 CCATCAAAGATCTTTGATGG  20
                                    10        20
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LNQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LNQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LNQ)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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  4lnq
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  IFI2_MOUSE | Q9R002
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IFI2_MOUSE | Q9R002: 4jbj 4jbk 4l5q 4l5r 4l5s 4l5t

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4LNQ)