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(-) Description

Title :  CRYSTAL STRUCTURE OF HCOV-OC43 N-NTD COMPLEXED WITH CMP
 
Authors :  S. Y. Lin, C. L. Liu, M. H. Hou
Date :  10 Jul 13  (Deposition) - 28 May 14  (Release) - 28 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.74
Chains :  Asym./Biol. Unit :  A
Keywords :  Hcov-Oc43, Nucleocapsid Protein, N-Terminal Domain, Rna Binding, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Y. Lin, C. L. Liu, Y. M. Chang, J. Zhao, S. Perlman, M. H. Hou
Structural Basis For The Identification Of The N-Terminal Domain Of Coronavirus Nucleocapsid Protein As An Antiviral Target
J. Med. Chem. V. 57 2247 2014
PubMed-ID: 24564608  |  Reference-DOI: 10.1021/JM500089R

(-) Compounds

Molecule 1 - NUCLEOPROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 55-187
    Gene: N
    Organism Common: HCOV-OC43
    Organism Scientific: HUMAN CORONAVIRUS
    Organism Taxid: 31631
    Strain: OC43

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1C5P1Ligand/IonCYTIDINE-5'-MONOPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:57 , PRO A:61 , TYR A:62 , TYR A:63 , SER A:64 , PHE A:66 , ARG A:122 , TYR A:124 , TYR A:126 , ARG A:164 , ALA A:171 , GLU A:189 , HOH A:401 , HOH A:404BINDING SITE FOR RESIDUE C5P A 200

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LMC)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp A:165 -Pro A:166

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LMC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LMC)

(-) Exons   (0, 0)

(no "Exon" information available for 4LMC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eee.....................hhhh.eeeeeee..............eeeeee..hhhhh..........eeeee....................................eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lmc A  56 EFNVVPYYSWFSGITQFQKGKEFEFVEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGQLLPRWYFYYLGTGPHAKDQYGTDIDGVYWVASNQADVNTPADIVDRDPSSDEAIPTRFPPGTVLPQGYYIEG 190
                                    65        75        85        95       105       118       128       138       148       158       168       178       188  
                                                                                    114|                                                                        
                                                                                     118
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LMC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LMC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LMC)

(-) Gene Ontology  (9, 13)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NCAP_CVHOC | P33469: 4j3k 4kxj 4li4 4lm7 4lm9 4lmt
        Q6SA23_CVHOC | Q6SA23: 4j3k 4kxj 4li4 4lm7 4lm9 4lmt

(-) Related Entries Specified in the PDB File

4lm7 4lm9 4lmt