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(-) Description

Title :  CLPB NBD2 R621Q FROM T. THERMOPHILUS IN COMPLEX WITH AMPPCP AND GUANIDINIUM CHLORIDE
 
Authors :  C. Zeymer, T. R. M. Barends, N. D. Werbeck, I. Schlichting, J. Reinstein
Date :  04 Jul 13  (Deposition) - 12 Feb 14  (Release) - 09 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Aaa+ Protein, Nucleotide Binding Domain, Molecular Chaperone, Disaggregase, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Zeymer, T. R. M. Barends, N. D. Werbeck, I. Schlichting, J. Reinstei
Elements In Nucleotide Sensing And Hydrolysis Of The Aaa+ Disaggregation Machine Clpb: A Structure-Based Mechanistic Dissection Of A Molecular Motor
Acta Crystallogr. , Sect. D V. 70 582 2014
PubMed-ID: 24531492  |  Reference-DOI: 10.1107/S1399004713030629

(-) Compounds

Molecule 1 - CHAPERONE PROTEIN CLPB
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: NUCLEOTIDE BINDING DOMAIN 2, UNP RESIDUES 520-854
    Gene: CLPB
    Mutation: YES
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1ACP1Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2GAI1Ligand/IonGUANIDINE
3MG1Ligand/IonMAGNESIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:559 , VAL A:560 , VAL A:561 , THR A:597 , GLY A:598 , VAL A:599 , GLY A:600 , LYS A:601 , THR A:602 , GLU A:603 , ILE A:765 , GLN A:769 , MG A:902 , GAI A:903 , HOH A:1001 , HOH A:1002 , HOH A:1003 , HOH A:1004 , HOH A:1006 , HOH A:1063BINDING SITE FOR RESIDUE ACP A 901
2AC2SOFTWARETHR A:602 , ACP A:901 , HOH A:1001 , HOH A:1002 , HOH A:1003BINDING SITE FOR RESIDUE MG A 902
3AC3SOFTWAREGLN A:621 , ASP A:623 , GLU A:668 , GLU A:743 , ACP A:901BINDING SITE FOR RESIDUE GAI A 903

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LJA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LJA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LJA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LJA)

(-) Exons   (0, 0)

(no "Exon" information available for 4LJA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:321
                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh.hhhhhh....hhhhhhhh....hhhhhhhhhhhhhhhhh.........eeeeee.....hhhhhhhhhhhhhhhhhh.eeeee.hhh.hhhhhhhhhh....hhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhheee.....eee....eeeee...hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhhhhhhh...eeeehhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.......eeeeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lja A 518 HMEVTEEDIAEIVSRWTGIPVSKLLEGELRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIQIDMTEYMEKHAVSRLIGAPPGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPAGLVFAVP 849
                                   527       537       551       561       571       581       591       601       611       621       631       641|      658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848 
                                                     545|                                                                                        641|                                                                                                                                                                                                        
                                                      550                                                                                         649
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LJA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LJA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LJA)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  4lja
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  CLPB_THET8 | Q9RA63
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  CLPB_THET8 | Q9RA63
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLPB_THET8 | Q9RA63: 1qvr 4fct 4fcv 4fcw 4fd2 4hse 4lj4 4lj5 4lj6 4lj7 4lj8 4lj9

(-) Related Entries Specified in the PDB File

4lj4 4lj5 4lj6 4lj7 4lj8 4lj9