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(-) Description

Title :  THYMIDINE PHOSPHORYLASE FROM E.COLI WITH 3'-AZIDO-3'-DEOXYTHYMIDINE
 
Authors :  V. I. Timofeev, Y. A. Abramchik, R. S. Esipov, I. P. Kuranova
Date :  01 Jul 13  (Deposition) - 09 Apr 14  (Release) - 09 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.52
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Timofeev, Y. Abramchik, N. Zhukhlistova, T. Muravieva, I. Fateev, R. Esipov, I. Kuranova
3'-Azidothymidine In The Active Site Of Escherichia Coli Thymidine Phosphorylase: The Peculiarity Of The Binding On The Basis Of X-Ray Study.
Acta Crystallogr. , Sect. D V. 70 1155 2014
PubMed-ID: 24699659  |  Reference-DOI: 10.1107/S1399004714001904

(-) Compounds

Molecule 1 - THYMIDINE PHOSPHORYLASE
    Chains: A
    EC Number: 2.4.2.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: DEOA, TPP, TTG, B4382, JW4345
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12
    Synonym: TDRPASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric Unit (3, 10)
No.NameCountTypeFull Name
1AZZ1Ligand/Ion3'-AZIDO-3'-DEOXYTHYMIDINE
2GOL2Ligand/IonGLYCEROL
3SO47Ligand/IonSULFATE ION
Biological Unit 1 (3, 20)
No.NameCountTypeFull Name
1AZZ2Ligand/Ion3'-AZIDO-3'-DEOXYTHYMIDINE
2GOL4Ligand/IonGLYCEROL
3SO414Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:84 , SER A:86 , SER A:95 , SER A:113 , THR A:123 , HOH A:628 , HOH A:655 , HOH A:660 , HOH A:668 , HOH A:790 , HOH A:1033BINDING SITE FOR RESIDUE SO4 A 501
02AC2SOFTWAREGLN A:5 , ARG A:9 , ARG A:12 , ALA A:175 , THR A:176 , VAL A:177 , ASP A:178 , HOH A:666 , HOH A:707 , HOH A:1039 , HOH A:1042BINDING SITE FOR RESIDUE SO4 A 502
03AC3SOFTWAREARG A:257 , MET A:338 , THR A:340 , HIS A:403 , ASP A:406 , GLU A:407 , ASN A:408 , HOH A:726 , HOH A:816 , HOH A:1057BINDING SITE FOR RESIDUE SO4 A 503
04AC4SOFTWAREHIS A:15 , ALA A:16 , HOH A:1021BINDING SITE FOR RESIDUE SO4 A 504
05AC5SOFTWAREARG A:234 , LYS A:288 , HOH A:879 , HOH A:1075BINDING SITE FOR RESIDUE SO4 A 505
06AC6SOFTWAREGLN A:372 , ALA A:373 , HOH A:812BINDING SITE FOR RESIDUE SO4 A 506
07AC7SOFTWAREARG A:437 , SER A:439 , HOH A:760BINDING SITE FOR RESIDUE SO4 A 507
08AC8SOFTWAREARG A:268 , PHE A:273 , HOH A:723 , HOH A:727 , HOH A:859BINDING SITE FOR RESIDUE GOL A 508
09AC9SOFTWAREPHE A:2 , LEU A:3 , ALA A:4 , GLN A:5 , GLN A:38 , HOH A:1031BINDING SITE FOR RESIDUE GOL A 509
10BC1SOFTWARETHR A:87 , TYR A:168 , ARG A:171 , VAL A:177 , SER A:186 , LYS A:190 , PHE A:210 , MET A:211 , LEU A:220 , HOH A:1023 , HOH A:1028 , HOH A:1086BINDING SITE FOR RESIDUE AZZ A 510

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LHM)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu A:1 -Phe A:2

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LHM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LHM)

(-) Exons   (0, 0)

(no "Exon" information available for 4LHM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:440
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4lhma1 A:1-70 Thymidine phosphorylase                                d4lhma2 A:71-335 Thymidine phosphorylase                                                                                                                                                                                                                                 d4lhma3 A:336-440 Thymidine phosphorylase                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh......hhhhh.....eeeee......hhhhhhhhhhhhh...eeee.........hhhhhhh.........hhhhhhhhhhhhheeee......hhhhhhhhhhhh......hhhhhhhhhhhhhhh....eeeeeeee.......hhhhhhhhhhhhhhhhhhh..eeeeeeee........eehhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh....eeeee.....eeeeeehhhhhhhhhhhh...............eee.......ee......eeeee.hhhhhhhhhhhhhhheeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lhm A   1 LFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSEALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVTMALCVEMLISGKLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPTDFVENYAKYLPTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDENNWQEAAKAVKAAIKLADKAPESTPTVYRRISE 440
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 3)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LHM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LHM)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)

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        TYPH_ECOLI | P07650: 1azy 1otp 1tpt 2tpt 4ead 4eaf

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