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(-) Description

Title :  N-TERMINAL TRUNCATED NLEC STRUCTURE
 
Authors :  W. Q. Li, Y. X. Liu, X. L. Sheng, C. Y. Yan, J. W. Wang
Date :  28 Jun 13  (Deposition) - 15 Jan 14  (Release) - 25 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Metallopeptidases, A Type Iii Secretion Protease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Li, Y. Liu, X. Sheng, P. Yin, F. Hu, Y. Liu, C. Chen, Q. Li, C. Yan, J. Wan
Structure And Mechanism Of A Type Iii Secretion Protease, Nlec
Acta Crystallogr. , Sect. D V. 70 40 2014
PubMed-ID: 24419377  |  Reference-DOI: 10.1107/S1399004713024619

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ECS0847, Z0986
    Organism Taxid: 83334

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4LGI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LGI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LGI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LGI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LGI)

(-) Exons   (0, 0)

(no "Exon" information available for 4LGI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhheee..eee.........hhhhhhhhhhhhh......eee..eeee.....eeee..........hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lgi A  50 SNVYESVIRAVHDSRSRLIDQHTVDmIGNTVLDALSRSQTFRDAVSYGIHNEKVHIGCIKYRNEYELNEESSVKIDDIQSLTCNELYEYDVGQEPIFPICEAGENDNEEPYVSFSVAPDTDSYEmPSWQEGLIHEIIHHVTGSSLGPTEILARRVAQELGWSVPEREAHLRLRNLNALRQAAmRHEENERAFFERLGTISDRYEASPDFTEY 278
                                    59        69     |  79        89        99       109       119       129       139       149       159       169    |  179       189   ||  208       218  ||   236       246  |    256       266       276  
                                                    75-MSE                                                                                            174-MSE            193|               221|                249-MSE                         
                                                                                                                                                                          203                230                                                


Chain B from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhheee..eee..............hhhhhh......eee..eeee.....eeee..........hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lgi B  50 SNVYESVIRAVHDSRSRLIDQHTVDmIGNTVLDALSRSQTFRDAVSYGIHNEKVHIGCIKYRNEYELNEESSVIDDIQSLTCNELYEYDVQEPIFPICEAGENDNEEPYVSFSVAPDTDSYEmPSWQEGLIHEIIHHVTGSLGPTEILARRVAQELGWSREAHLRLRNLNALRQAAmRHEENERAFFERLGTISDRYEASPDFTEY 278
                                    59        69     |  79        89        99       109       119  ||   130       140|      151       161       171  |    181       191||     211       232       242      |252       262       272      
                                                    75-MSE                                        122|             140|                             174-MSE           192|              220|              249-MSE                         
                                                                                                   124              142                                                203               232                                              


Chain C from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhheee..eee........hhhhhhhhhhh........eee..eeee.....eeee..........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lgi C  50 SNVYESVIRAVHDSRSRLIDQHTVDmIGNTVLDALSRSQTFRDAVSYGIHNEKVHIGCIKYRNEYELNEESSVIDDIQSLTCNELYEYDVGQEPIFPICEAGENDNEEPYVSFSVAPDTDSYEmPSWQEGLIHEIIHHVTGSSLGPTEILARRVAQELGWSREAHLRLRNLNALRQAAmRHEENERAFFERLGTISDRYEASPDFTEY 278
                                    59        69     |  79        89        99       109       119  ||   130       140       150       160       170   |   180       190  ||   209       219||     240       250       260       270        
                                                    75-MSE                                        122|                                               174-MSE            193|              220|              249-MSE                         
                                                                                                   124                                                                   203               232                                              


Chain D from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhheee..eee..............hhhhh.....eee..eeee.....eeee..........hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lgi D  50 SNVYESVIRAVHDSRSRLIDQHTVDmIGNTVLDALSRSQTFRDAVSYGIHNEKVHIGCIKYRNEYELNEESSVIDDIQSLTCNELYEGQEPIFPICEAGENDNEEPYVSFSVAPDTDSYEmPSWQEGLIHEIIHHVTGSSLGPTEILARRVAQELGWSEREAHLRLRNLNALRQAAmRHEENERAFFERLGTISDRYEASPDFTEY 278
                                    59        69     |  79        89        99       109       119  ||   130      |143       153       163       173|      183       193|      212       232       242      |252       262       272      
                                                    75-MSE                                        122|          137|                              174-MSE            193|              220|               249-MSE                         
                                                                                                   124           141                                                  203               231
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LGI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LGI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LGI)

(-) Gene Ontology  (1, 1)

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 Related Entries

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        Q8X834_ECO57 | Q8X834: 4lgj

(-) Related Entries Specified in the PDB File

4lgj