4LE7 - JenaLib

Title :   THE CRYSTAL STRUCTURE OF PYOCIN L1 AT 2.09 ANGSTROMS

Authors :   R. Grinter, A. W. Roszak, L. Mccaughey, R. J. Cogdell, D. Walker

Date :   25 Jun 13 (Deposition) - 19 Feb 14 (Release) - 19 Mar 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.09

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Monocot Mannose Binding Lectin, Mmbl, Galanthus Nivalis Agglutinin, Gna, Beta Prism, Bacteriocin, Protein Antimicrobial, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. C. Mccaughey, R. Grinter, I. Josts, A. W. Roszak, K. I. Walen, R. J. Cogdell, J. Milner, T. Evans, S. Kelly, N. P. Tucker, O. Byron, B. Smith, D. Walker
Lectin-Like Bacteriocins From Pseudomonas Spp. Utilise D-Rhamnose Containing Lipopolysaccharide As A Cellular Receptor.
Plos Pathog. V. 10 03898 2014
PubMed-ID: 24516380 | Reference-DOI: 10.1371/JOURNAL.PPAT.1003898

Compounds

Molecule 1 - PYOCIN L1
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	1333543
	Strain	:	C 1433

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 45)

Asymmetric Unit (2, 45)

No.	Name	Count	Type	Full Name
1	CL	3	Ligand/Ion	CHLORIDE ION
2	EDO	42	Ligand/Ion	1,2-ETHANEDIOL

Biological Unit 1 (1, 28)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EDO	28	Ligand/Ion	1,2-ETHANEDIOL

Biological Unit 2 (1, 14)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EDO	14	Ligand/Ion	1,2-ETHANEDIOL

Sites (44, 44)

Asymmetric Unit (44, 44)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:123 , THR A:245 , THR A:246 , EDO A:303 , HOH A:457	BINDING SITE FOR RESIDUE EDO A 301
02	AC2	SOFTWARE	ALA A:2 , SER A:4 , GLN A:9 , LEU A:243 , ASP A:244 , THR A:245 , HOH A:510	BINDING SITE FOR RESIDUE EDO A 302
03	AC3	SOFTWARE	GLU A:89 , TYR A:91 , ASN A:123 , ILE A:125 , EDO A:301 , HOH A:478	BINDING SITE FOR RESIDUE EDO A 303
04	AC4	SOFTWARE	PRO A:20 , ASN A:21 , LYS A:23 , ASP A:96 , GLN A:239 , HOH A:492	BINDING SITE FOR RESIDUE EDO A 304
05	AC5	SOFTWARE	PRO A:20 , GLN A:95 , ASP A:96 , GLY A:238 , GLN A:239 , SER A:250 , HOH A:506	BINDING SITE FOR RESIDUE EDO A 305
06	AC6	SOFTWARE	LYS A:124 , ILE A:139 , HOH A:512 , HOH A:557	BINDING SITE FOR RESIDUE EDO A 306
07	AC7	SOFTWARE	GLN A:9 , LYS A:122 , CL A:329 , HOH A:572 , GLN B:161	BINDING SITE FOR RESIDUE EDO A 307
08	AC8	SOFTWARE	ASP A:88 , HOH A:572	BINDING SITE FOR RESIDUE EDO A 308
09	AC9	SOFTWARE	LYS A:231 , THR B:47 , THR B:48 , VAL B:50 , ALA B:72 , TRP B:73	BINDING SITE FOR RESIDUE EDO A 309
10	BC1	SOFTWARE	GLY A:200 , PRO A:232	BINDING SITE FOR RESIDUE EDO A 310
11	BC2	SOFTWARE	PRO A:43 , ASN A:46 , THR A:48 , PRO A:49 , EDO A:317 , CL A:330	BINDING SITE FOR RESIDUE EDO A 311
12	BC3	SOFTWARE	LYS A:108 , TRP A:109 , THR A:195 , HIS A:196 , HOH A:430 , HOH A:520 , HOH A:542 , HIS B:196 , EDO B:307	BINDING SITE FOR RESIDUE EDO A 312
13	BC4	SOFTWARE	ALA A:107 , GLY A:110 , ILE A:112	BINDING SITE FOR RESIDUE EDO A 313
14	BC5	SOFTWARE	LEU A:36 , GLY A:98 , LYS A:225	BINDING SITE FOR RESIDUE EDO A 314
15	BC6	SOFTWARE	LYS A:67 , GLY A:69 , VAL A:133 , ARG A:174 , HOH A:431 , HOH A:482 , HOH A:555	BINDING SITE FOR RESIDUE EDO A 315
16	BC7	SOFTWARE	VAL A:10 , LYS A:55 , GLU A:59 , TYR A:65 , HOH A:416 , HOH A:450 , HOH A:479	BINDING SITE FOR RESIDUE EDO A 316
17	BC8	SOFTWARE	THR A:47 , THR A:48 , VAL A:50 , ALA A:72 , TRP A:73 , EDO A:311 , EDO A:318	BINDING SITE FOR RESIDUE EDO A 317
18	BC9	SOFTWARE	VAL A:50 , ASN A:66 , ALA A:72 , EDO A:317 , HOH A:580	BINDING SITE FOR RESIDUE EDO A 318
19	CC1	SOFTWARE	VAL A:71 , HOH A:428	BINDING SITE FOR RESIDUE EDO A 319
20	CC2	SOFTWARE	TYR A:143 , ILE A:164 , THR A:210 , LYS A:212 , HOH A:440 , HOH A:574	BINDING SITE FOR RESIDUE EDO A 320
21	CC3	SOFTWARE	THR A:41 , VAL A:50 , ASN A:66 , LYS A:67 , ALA A:68 , HOH A:576 , HOH A:580	BINDING SITE FOR RESIDUE EDO A 321
22	CC4	SOFTWARE	LYS A:25 , GLY A:40 , PRO A:52 , HOH A:496	BINDING SITE FOR RESIDUE EDO A 322
23	CC5	SOFTWARE	GLN A:15 , PHE A:16 , EDO A:324	BINDING SITE FOR RESIDUE EDO A 323
24	CC6	SOFTWARE	EDO A:323 , HOH A:581	BINDING SITE FOR RESIDUE EDO A 324
25	CC7	SOFTWARE	ARG A:12 , GLN A:15 , HOH A:432 , HOH A:581	BINDING SITE FOR RESIDUE EDO A 325
26	CC8	SOFTWARE	ASP A:13	BINDING SITE FOR RESIDUE EDO A 326
27	CC9	SOFTWARE	VAL A:113 , SER A:115	BINDING SITE FOR RESIDUE EDO A 327
28	DC1	SOFTWARE	GLN A:148 , ASP A:150 , ASN A:152 , TYR A:156	BINDING SITE FOR RESIDUE EDO A 328
29	DC2	SOFTWARE	LYS A:122 , THR A:245 , EDO A:307 , GLN B:161	BINDING SITE FOR RESIDUE CL A 329
30	DC3	SOFTWARE	TRP A:45 , ASN A:46 , EDO A:311	BINDING SITE FOR RESIDUE CL A 330
31	DC4	SOFTWARE	SER B:3 , PRO B:20 , ASN B:93 , LEU B:94 , ILE B:248 , TRP B:249 , HOH B:456 , HOH B:524	BINDING SITE FOR RESIDUE EDO B 301
32	DC5	SOFTWARE	GLN B:161 , HOH B:528	BINDING SITE FOR RESIDUE EDO B 302
33	DC6	SOFTWARE	GLN B:148 , ASN B:152 , TYR B:156 , HOH B:420 , HOH B:513	BINDING SITE FOR RESIDUE EDO B 303
34	DC7	SOFTWARE	SER B:4 , GLN B:9 , LEU B:243 , ASP B:244 , THR B:245 , THR B:246 , EDO B:309	BINDING SITE FOR RESIDUE EDO B 304
35	DC8	SOFTWARE	ALA B:6 , THR B:245 , EDO B:309	BINDING SITE FOR RESIDUE EDO B 305
36	DC9	SOFTWARE	EDO A:312 , HOH A:520 , HIS B:194 , EDO B:308	BINDING SITE FOR RESIDUE EDO B 307
37	EC1	SOFTWARE	HOH A:542 , ALA B:191 , LEU B:192 , HIS B:194 , EDO B:307	BINDING SITE FOR RESIDUE EDO B 308
38	EC2	SOFTWARE	PRO B:7 , GLN B:9 , EDO B:304 , EDO B:305	BINDING SITE FOR RESIDUE EDO B 309
39	EC3	SOFTWARE	ALA B:191 , HOH B:459	BINDING SITE FOR RESIDUE EDO B 310
40	EC4	SOFTWARE	TYR A:78 , THR A:79 , ALA A:80 , TRP B:45 , LEU B:224	BINDING SITE FOR RESIDUE EDO B 311
41	EC5	SOFTWARE	ASP B:88 , GLU B:89 , PRO B:117 , GLU B:118	BINDING SITE FOR RESIDUE EDO B 312
42	EC6	SOFTWARE	GLU B:89 , LEU B:114 , LYS B:206 , PHE B:214 , EDO B:314 , HOH B:478 , HOH B:493	BINDING SITE FOR RESIDUE EDO B 313
43	EC7	SOFTWARE	VAL B:113 , LEU B:114 , EDO B:313 , HOH B:542	BINDING SITE FOR RESIDUE EDO B 314
44	EC8	SOFTWARE	GLN B:9 , VAL B:10	BINDING SITE FOR RESIDUE CL B 315

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee....ee....eee.....eeeee.....eeeee...eeeee........eeee...eeee.....eeee........hhhhhhh.eeee.....eeee.....ee............eeee....ee....eeee..eeeee.....eeeee....eeeee.......eeee.....eeeee..eeeee.........eeeee....eeee...eeee...ee.......ee...........ee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4le7 A   2 ASSLAPRQVIRDGQFITSPNGKYKLVMQADGNLVLYEDGTKPIWNTTPVGPGAKAVMEFNLNLYNKAGQVAWSSNVYTAYLFEEFKDEAYLNLQDDGDFGIFSDEAKWGSIVLSRPEVGVKNKIIPTGTVMVPGTEYINGNYRLAFQGDGNLVIYQINPQVVIWATYTMGADRAVVQEDGNFVIYKGTTALWHTHTATGMPAYLKFTNTGKLFLSQPTLLWTLKRGSLSKPPKVIPGQHGPLDTTPIWSWPHDY 255
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251

Chain B from PDB  Type:PROTEIN  Length:253
                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee....ee...eeee.....eeeee.....eeeee...eeeee........eeee...eeee.....eeee..........hhhhhheeee.....eeee...eeee............eeee....ee...eeeee..eeeee.....eeeee....eeeee.......eeee.....eeeee..eeeee.........eeeee....eeee...eeee...ee.......ee...........ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4le7 B   2 ASSLAPRQVIRDGQFITSPNGKYKLVMQADGNLVLYEDGTKPIWNTTPVGPGAKAVMEFNLNLYNKAGQVAWSSNVYTAYLFEEFKDEAYLNLQDDGDFGIFSDEAKWGSIVLSRPEVGVKNKIIPTGTVMVPGTEYINGNYRLAFQGDGNLVIYQINPQVVIWATYTMGADRAVVQEDGNFVIYKGTTALWHTHTATGMPAYLKFTNTGKLFLSQPTLLWTLKRGSLSKPPKVIPGQHGPLDTTPIWSWPHD 254
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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Description