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(-) Description

Title :  CRYSTAL STRUCTURE OF A CONJUGATIVE TRANSPOSON LIPOPROTEIN (BACEGG_03088) FROM BACTEROIDES EGGERTHII DSM 20697 AT 1.70 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  20 Jun 13  (Deposition) - 07 Aug 13  (Release) - 07 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Pf12988 Family Protein, Duf3872, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Conjugative Transposon Lipoprotein (Bacegg_03088) From Bacteroides Eggerthii Dsm 20697 At 1. 70 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONJUGATIVE TRANSPOSON LIPOPROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BACEGG_03088, ZP_03460274.1
    Organism Scientific: BACTEROIDES EGGERTHII
    Organism Taxid: 483216
    Strain: DSM 20697

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2EDO6Ligand/Ion1,2-ETHANEDIOL
3MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2EDO3Ligand/Ion1,2-ETHANEDIOL
3MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (3, 6)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2EDO3Ligand/Ion1,2-ETHANEDIOL
3MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:73 , LYS A:92 , GLY A:96 , TYR A:115BINDING SITE FOR RESIDUE 1PE A 201
2AC2SOFTWARETYR A:138 , GLU A:139BINDING SITE FOR RESIDUE EDO A 202
3AC3SOFTWAREPHE A:85 , ILE A:127 , HOH A:320 , HOH A:368BINDING SITE FOR RESIDUE EDO A 203
4AC4SOFTWAREGLU A:141 , HOH A:317 , HOH A:392BINDING SITE FOR RESIDUE EDO A 204
5AC5SOFTWAREPHE B:73 , LYS B:92 , MSE B:93 , GLY B:96 , TYR B:115 , THR B:117BINDING SITE FOR RESIDUE 1PE B 201
6AC6SOFTWARELYS B:69 , THR B:76 , LEU B:107 , GLU B:110 , HOH B:321BINDING SITE FOR RESIDUE EDO B 202
7AC7SOFTWAREPHE A:83 , HOH A:321 , PRO B:50 , VAL B:51 , PRO B:52 , VAL B:61 , GLU B:62 , HOH B:383 , HOH B:385BINDING SITE FOR RESIDUE EDO B 203
8AC8SOFTWAREASN B:125 , GLU B:141 , ASP B:143 , HOH B:388BINDING SITE FOR RESIDUE EDO B 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LBA)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Tyr A:42 -Pro A:43
2Tyr B:42 -Pro B:43

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LBA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LBA)

(-) Exons   (0, 0)

(no "Exon" information available for 4LBA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:106
                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...........eeeeeeeeee........eeeeeeeee..eeeee...........ee....eeeeeeee.....eeeeeeeee....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 4lba A  41 SYPFTVEVmPVPNKVVKGQTVEIRCELKKEGDFSGTLYTIRYFQFEGEGSLKmDNGITFLPNDRYLLENEKFRLYYTAAGDEAHNFIVVVEDNFSNSYELEFDFNN 146
                                    50        60        70        80        90  |    100       110       120       130       140      
                                   49-MSE                                      93-MSE                                                 


Chain B from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee...........eeeeeeeeee........eeeeeeeee..eeeee...........eee...eeeeeeee.....eeeeeeeee....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 4lba B  38 IQQSYPFTVEVmPVPNKVVKGQTVEIRCELKKEGDFSGTLYTIRYFQFEGEGSLKmDNGITFLPNDRYLLENEKFRLYYTAAGDEAHNFIVVVEDNFSNSYELEFDFNN 146
                                    47 |      57        67        77        87     |  97       107       117       127       137         
                                      49-MSE                                      93-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LBA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LBA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LBA)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4LBA)

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