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(-) Description

Title :  CRYSTAL STRUCTURE OF PNPB COMPLEX WITH FMN
 
Authors :  J. Su, C. Zhang, N. Li, L. Gu
Date :  19 Jun 13  (Deposition) - 25 Jun 14  (Release) - 25 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.76
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Para-Benzoquinone Reductase, Pnpb In Complex With Fmn, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Su, C. Zhang, N. Li, L. Gu
Crystal Structure Of Pnpb Complex With Fmn
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NAD(P)H DEHYDROGENASE (QUINONE)
    Chains: A, B, C, D
    EC Number: 1.6.5.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PNPB
    Organism Scientific: PSEUDOMONAS SP.
    Organism Taxid: 165468
    Strain: WBC-3

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1FMN4Ligand/IonFLAVIN MONONUCLEOTIDE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:11 , SER A:12 , TYR A:13 , GLY A:14 , HIS A:15 , ILE A:16 , PRO A:83 , THR A:84 , ARG A:85 , PHE A:86 , SER A:119 , THR A:120 , ALA A:121 , SER A:122 , GLY A:125 , ASP C:98 , HIS C:140BINDING SITE FOR RESIDUE FMN A 400
2AC2SOFTWARESER B:11 , SER B:12 , TYR B:13 , GLY B:14 , HIS B:15 , ILE B:16 , PRO B:83 , THR B:84 , ARG B:85 , PHE B:86 , SER B:119 , THR B:120 , ALA B:121 , SER B:122 , GLY B:125 , ASP D:98 , HIS D:140BINDING SITE FOR RESIDUE FMN B 400
3AC3SOFTWAREASP A:98 , HIS A:140 , SER C:11 , SER C:12 , TYR C:13 , GLY C:14 , HIS C:15 , ILE C:16 , PRO C:83 , THR C:84 , ARG C:85 , PHE C:86 , SER C:119 , THR C:120 , ALA C:121 , SER C:122 , GLY C:125BINDING SITE FOR RESIDUE FMN C 400
4AC4SOFTWAREASP B:98 , HIS B:140 , SER D:11 , SER D:12 , TYR D:13 , GLY D:14 , HIS D:15 , ILE D:16 , PRO D:83 , THR D:84 , ARG D:85 , PHE D:86 , SER D:119 , THR D:120 , ALA D:121 , SER D:122 , GLY D:125BINDING SITE FOR RESIDUE FMN D 400

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LAF)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Met D:1 -Pro D:2

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LAF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LAF)

(-) Exons   (0, 0)

(no "Exon" information available for 4LAF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:207
                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....hhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhhh.......hhhhhhhh.eeeeeeeee..eehhhhhhhhhhhhhhhhh......eeeeeeee.......hhhhhhhhhhhhhh..ee......hhhhhh............eee.........hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4laf A   1 MPTKIQIVFYSSYGHIYKMAEAIAAGAREVGDVEVTLLQVPELMPEEVQVKSGIKGYRAAFGSIPYATPEVLAEADAIIFGTPTRFGNMCSQMRNFLDQTGGLWMSGGLIGKVGSVFTSTASQHGGQETTITSFHTTLLHHGMVIVGVPYSEPGLTNMTEISGGTPYGASTLAGADGSRQPSENELQIARFQGKHVATIAKRLANNK 207
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       


Chain B from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhhhh......hhhhhh...eeeeeee......hhhhhhhhhhhhhhhhh......eeeeeeee.......hhhhhhhhhhhhhh..ee......hhhhhh............eee.........hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4laf B   2 PTKIQIVFYSSYGHIYKMAEAIAAGAREVGDVEVTLLQVPELMPEEVQVKSGIKGYRAAFGSIPYATPEVLAEADAIIFGTPTRFGNMCSQMRNFLDQTGGLWMSGGLIGKVGSVFTSTASQHGGQETTITSFHTTLLHHGMVIVGVPYSEPGLTNMTEISGGTPYGASTLAGADGSRQPSENELQIARFQGKHVATIAKRLANN 206
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201     


Chain C from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhhhhhhhhhhhhhh....eeeeeee......hhhhh......hhhhhhh.eeeeeeeee..eehhhhhhhhhhhhhhhhh......eeeeeeee.......hhhhhhhhhhhhhh..ee......hhhhhh............eee.........hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4laf C   2 PTKIQIVFYSSYGHIYKMAEAIAAGAREVGDVEVTLLQVPELGYRAAFGSIPYATPEVLAEADAIIFGTPTRFGNMCSQMRNFLDQTGGLWMSGGLIGKVGSVFTSTASQHGGQETTITSFHTTLLHHGMVIVGVPYSEPGLTNMTEISGGTPYGASTLAGADGSRQPSENELQIARFQGKHVATIAKRLANN 206
                                    11        21        31        41 ||     63        73        83        93       103       113       123       133       143       153       163       173       183       193       203   
                                                                    43|                                                                                                                                                      
                                                                     56                                                                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:188
                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....hhhhhhhhhhhhhhh....eeeeeee...........hhhhhh...eeeeeeeee..eehhhhhhhhh.hhhhhhh......eeeeeeee.......hhhhhhhhhhhhhh..ee......hhhhhh............eee.........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4laf D   1 MPTKIQIVFYSSYGHIYKMAEAIAAGAREVGDVEVTLLQVPELFGSIPYATPEVLAEADAIIFGTPTRFGNMCSQMRNFLDQTGGLWMSGGLIGKVGSVFTSTASQHGGQETTITSFHTTLLHHGMVIVGVPYSEPGLTNMTEISGGTPYGASTLAGADGSRQPSENELQIARFQGKHVATIAKRLAN 205
                                    10        20        30        40  ||    67        77        87        97       107       117       127       137       147       157       167       177       187       197        
                                                                     43|                                                                                                                                                
                                                                      61
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LAF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LAF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LAF)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        PNPB_PSEWB | C1I202: 4la4

(-) Related Entries Specified in the PDB File

4la4