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(-) Description

Title :  CRYSTAL STRUCTURE OF A GLUTATHIONE TRANSFERASE FAMILY MEMBER FROM XENORHABDUS NEMATOPHILA, TARGET EFI-507418, WITH TWO GSH PER SUBUNIT
 
Authors :  M. W. Vetting, R. Toro, R. Bhosle, N. F. Al Obaidi, L. L. Morisco, S. R. Wa S. Sojitra, M. Stead, E. Washington, A. Scott Glenn, S. Chowdhury, B. J. Hammonds, B. Hillerich, J. Love, R. D. Seidel, H. J. Imker, J. A. Gerl R. N. Armstrong, S. C. Almo, Enzyme Function Initiative (Efi)
Date :  17 Jun 13  (Deposition) - 26 Jun 13  (Release) - 26 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Glutathione S-Transferase Fold, Enzyme Function Initiative, Efi, Structural Genomics, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. W. Vetting, R. Toro, R. Bhosle, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserman, S. Sojitra, M. Stead, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, B. Hillerich, J. Love, R. D. Seidel, H. J. Imker, J. A. Gerlt, R. N. Armstrong, S. C. Almo, Enzyme Function Initiative (Efi)
Crystal Structure Of A Glutathione Transferase Family Membe From Xenorhabdus Nematophila, Target Efi-507418, With Two Gsh Per Subunit
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUTATHIONE S-TRANSFERASE ENZYME WITH THIOREDOXIN-LIKE DOMAIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: YFCG, XNC1_3157
    Organism Scientific: XENORHABDUS NEMATOPHILA
    Organism Taxid: 406817
    Strain: ATCC 19061

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GSH3Ligand/IonGLUTATHIONE
3MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GSH6Ligand/IonGLUTATHIONE
3MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:16 , GLY A:114 , PRO A:115 , GLY A:118 , ARG A:137 , TRP A:174 , GSH A:302 , GSH A:303 , HOH A:403 , HOH A:405 , HOH A:445 , HOH A:459 , HOH A:555 , HOH A:562BINDING SITE FOR RESIDUE GSH A 301
2AC2SOFTWARETHR A:14 , ASN A:16 , GLN A:43 , ASN A:55 , LYS A:56 , ILE A:57 , PRO A:58 , GLU A:76 , SER A:77 , ALA A:111 , GSH A:301 , HOH A:405 , HOH A:408 , HOH A:411 , HOH A:424 , HOH A:441 , HOH A:454 , HOH A:477BINDING SITE FOR RESIDUE GSH A 302
3AC3SOFTWAREPRO A:13 , PRO A:15 , TYR A:18 , HIS A:121 , CYS A:177 , GSH A:301 , HOH A:409 , HOH A:506 , HOH A:531BINDING SITE FOR RESIDUE GSH A 303
4AC4SOFTWAREARG A:99BINDING SITE FOR RESIDUE CL A 304
5AC5SOFTWAREGLU A:25 , TYR A:31 , HIS A:122 , ARG A:125 , TYR A:126 , ALA A:206 , HOH A:429 , HOH A:518BINDING SITE FOR RESIDUE MES A 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L8E)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ile A:57 -Pro A:58

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L8E)

(-) Exons   (0, 0)

(no "Exon" information available for 4L8E)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains d4l8ea1 A:7-91 automated matches                                                     d4l8ea2 A:92-209 automated matches                                                                                     SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhh......eeee.........eeeehhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l8e A   7 IDLYYAPTPNGYKITLFLEEVGLPYTIHPIDISAGDQFKPEFLAIAPNNKIPAIVDHQPDGGGEAISIFESGAILLYLANKTGRFLSKDTRERTEQLQWLFWQVAGFGPMLGQNHHFNRYAPEVVPYAIKRYTEESQRLYKVLNTQLEKTPYLGGNEYSIADIAVYPWAKCYEHQKINLEDYPAVKKWLEKIQQRPATQAAYN 209
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L8E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L8E)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)

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