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(-) Description

Title :  HUMAN ARTD3 (PARP3) - CATALYTIC DOMAIN IN COMPLEX WITH INHIBITOR ME0352
 
Authors :  T. Karlberg, A. G. Thorsell, A. E. G. Lindgren, T. Ekblad, S. Spjut, C. D. Andersson, J. Weigelt, A. Linusson, M. Elofsson, H. Schuler
Date :  13 Jun 13  (Deposition) - 19 Feb 14  (Release) - 19 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Diphtheria Toxin Like Adp-Ribose Transferase, Transferase, Adp- Ribosylation, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. E. Lindgren, T. Karlberg, T. Ekblad, S. Spjut, A. G. Thorsell, C. D. Andersson, T. T. Nhan, V. Hellsten, J. Weigelt, A. Linusson, H. Schuler, M. Elofsson
Chemical Probes To Study Adp-Ribosylation: Synthesis And Biochemical Evaluation Of Inhibitors Of The Human Adp-Ribosyltransferase Artd3/Parp3.
J. Med. Chem. V. 56 9556 2013
PubMed-ID: 24188023  |  Reference-DOI: 10.1021/JM401394U

(-) Compounds

Molecule 1 - POLY [ADP-RIBOSE] POLYMERASE 3
    Chains: A
    EC Number: 2.4.2.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNIC-BSA4
    Expression System Strain: BL21 (DE3) R3 PRARE
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: CATALYTIC PARP DOMAIN
    Gene: ADPRT3, ADPRTL3, PARP3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PARP-3, HPARP-3, ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN- LIKE 3, ARTD3, IRT1, NAD(+) ADP-RIBOSYLTRANSFERASE 3, ADPRT-3, POLY[ADP-RIBOSE] SYNTHASE 3, PADPRT-3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
11V91Ligand/Ion3-(4-OXO-3,4-DIHYDROQUINAZOLIN-2-YL)-N-[(1S)-1-PHENYLPROPYL]PROPANAMIDE
2DMS2Ligand/IonDIMETHYL SULFOXIDE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:287 , ASP A:291 , HIS A:384 , GLY A:385 , THR A:386 , TYR A:414 , SER A:422 , TYR A:425 , GLU A:514 , DMS A:602 , HOH A:712 , HOH A:767BINDING SITE FOR RESIDUE 1V9 A 601
2AC2SOFTWAREHIS A:384 , GLY A:398 , LEU A:399 , ARG A:400 , 1V9 A:601BINDING SITE FOR RESIDUE DMS A 602
3AC3SOFTWARELEU A:485 , GLU A:486BINDING SITE FOR RESIDUE DMS A 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L70)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4L70)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L70)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L70)

(-) Exons   (0, 0)

(no "Exon" information available for 4L70)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:354
                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4l70a1 A:176-321 automated matches                                                                                                            d4l70a2 A:322-532 automated matches                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee.....hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.ee.hhhhhhhhhh..eeee......hhhhhhhhhhhhh......eeeeeeeee...hhhhhhh......eeeeeee.hhhhhhhhhhhh..............eee..hhhhhhh....eee..eeeeeeeeeeee...eeee...............eeee...eee.hhhheeeee..eeeee....eee.hhhh.......eeee.hhh.eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4l70 A 176 SMKRVQPCSLDPATQKLITNIFSKEMFKNTMALMDLDVKKMPLGKLSKQQIARGFEALEALEEALKDGGQSLEELSSHFYTVIPHNFGHSQPPPINSPELLQAKKDMLLVLADIELAQALQAVSEQEKTVEEVPHPLDRDYQLLKCQLQLLDSGAPEYKVIQTYLEQTGSNHRCPTLQHIWKVNQEGEEDRFQAHSKLGNRKLLWHGTNMAVVAAILTSGLRIMPHSGGRVGKGIYFASENSKSAGYVIGMKCGAHHVGYMFLGEVALGREHHINTDNPSLKSPPPGFDSVIARGHTEPDPTQDTELELDGQQVVVPQGQPVPCPEFSSSTFSQSEYLIYQESQCRLRYLLEVH 532
                                   185       195       205       215       225       235     ||248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528    
                                                                                           241|                                                                                                                                                                                                                                                                                               
                                                                                            245
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L70)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L70)

(-) Gene Ontology  (20, 20)

Asymmetric/Biological Unit(hide GO term definitions)

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  4l70
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  PARP3_HUMAN | Q9Y6F1
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  2.4.2.30
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PARP3_HUMAN | Q9Y6F1: 2eoc 3c49 3c4h 3ce0 3fhb 4gv0 4gv2 4gv4 4l6z 4l7l 4l7n 4l7o 4l7p 4l7r 4l7u

(-) Related Entries Specified in the PDB File

4gv0 THE SAME PROTEIN COMPLEXED WITH ME0355.
4gv2 THE SAME PROTEIN COMPLEXED WITH ME0354.
4gv4 THE SAME PROTEIN COMPLEXED WITH ME0328.
4l6z
4l7l
4l7n
4l7o
4l7p
4l7r
4l7u