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(-) Description

Title :  P202 HIN1 IN COMPLEX WITH 12-MER DSDNA
 
Authors :  Q. Yin, Y. Tian, H. Wu
Date :  11 Jun 13  (Deposition) - 14 Aug 13  (Release) - 14 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.94
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I
Biol. Unit 1:  A,C,D,E  (2x)
Biol. Unit 2:  B,F,G  (2x)
Biol. Unit 3:  H,I  (1x)
Keywords :  Hin200, Ob Fold, Dsdna Binding Domain, Dna Binding Protein-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Yin, D. P. Sester, Y. Tian, Y. S. Hsiao, A. Lu, J. A. Cridland, V. Sagulenko, S. J. Thygesen, D. Choubey, V. Hornung, T. Walz, K. J. Stacey, H. Wu
Molecular Mechanism For P202-Mediated Specific Inhibition O Aim2 Inflammasome Activation.
Cell Rep V. 4 327 2013
PubMed-ID: 23850291  |  Reference-DOI: 10.1016/J.CELREP.2013.06.024

(-) Compounds

Molecule 1 - INTERFERON-ACTIVABLE PROTEIN 202
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSMT3
    Expression System Strain: BL21 DE3 RIPL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: P202 HIN1, UNP RESIDUES 46-243
    Gene: IFI202, IFI202A, IFI202B
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Strain: CZECH II
    Synonym: IFI-202, INTERFERON-INDUCIBLE PROTEIN P202, LUPUS SUSCEPTIBILITY PROTEIN P202
 
Molecule 2 - 12-MER DNA
    Chains: C, D, E, F, G, H, I
    Engineered: YES
    Other Details: CHEMICALLY SYNTHESIZED 12-MER DNA
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456789
Asymmetric Unit : ABCDEFGHI
Biological Unit 1 (2x): A CDE    
Biological Unit 2 (2x):  B   FG  
Biological Unit 3 (1x):        HI

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1SO45Ligand/IonSULFATE ION
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1SO48Ligand/IonSULFATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:106 , SER A:134 , GLU A:135BINDING SITE FOR RESIDUE SO4 A 301
2AC2SOFTWAREALA A:69 , THR A:70 , GLU A:71 , LYS A:104 , DG H:1 , DC H:2BINDING SITE FOR RESIDUE SO4 A 302
3AC3SOFTWAREARG B:95 , GLY B:172 , LEU B:218BINDING SITE FOR RESIDUE SO4 B 301
4AC4SOFTWAREASP A:202 , ARG A:224 , HIS A:233 , DA C:6 , DA E:4BINDING SITE FOR RESIDUE SO4 C 101
5AC5SOFTWARELYS A:53 , DT C:11 , DG D:9 , DC D:10 , DT D:11BINDING SITE FOR RESIDUE SO4 D 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L5S)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Asp A:195 -Asn A:196
2Asn B:207 -Ile B:208
3Tyr B:210 -Glu B:211
4Glu B:211 -Lys B:212

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L5S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L5S)

(-) Exons   (0, 0)

(no "Exon" information available for 4L5S)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee...eeeeeeee....ee...eee.eeeeee....eeeeee.hhhhh.......eeeee.eeee..eeee....eeee.hhhhh...hhhhhhhhhh..hhhhhhh.....eeeeeeee....ee..eeeeeee....eeeeee..............eeeeeeeee......eee.....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l5s A  45 STPKKNISKGAVLHEKPMTVMVLTATEPFNYKEGKENMFHATVATESKYYRVKVFNMDLKEKFTENQFITISKYFNSSGILEINETATVSEAAPNQMFEVPKNIIRSAKETLKISKIKELDSGTLIYGVFAVEKKKVNDKSITFKIKDNEDNIKVVWDKEQHNINYEKGDKLQLFSFHLRKGNGKPILHSGNHSFIKGE 243
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234         


Chain B from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eee...eeeeeeee...ee......eeeeeeee....eeeeee.hhhhhhhh...eeeeee.eeee..eeee....eeee.hhhhh...hhhhhhhhhh..hhhhhh......eeeeeeeeeeeee....eeeeee....eeeeee..............eeeeeeeee......eee.....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4l5s B  46 TPKKNISKGAVLHEKPMTVMVLTATEPFNYKEGKENMFHATVATESKYYRVKVFNMDLKEKFTENQFITISKYFNSSGILEINETATVSEAAPNQMFEVPKNIIRSAKETLKISKIKELDSGTLIYGVFAVEKKKVNDKSITFKIKDNEDNIKVVWDKEQHNINYEKGDKLQLFSFHLRKGNGKPILHSGNHSFIKGE 243
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235        


Chain C from PDB  Type:DNA  Length:11
                                           
                 4l5s C   1 GCGATATCGCT  11
                                    10 


Chain D from PDB  Type:DNA  Length:12
                                            
                 4l5s D   1 GCGATATCGCTG  12
                                    10  


Chain E from PDB  Type:DNA  Length:11
                                           
                 4l5s E   1 GCGATATCGCT  11
                                    10 


Chain F from PDB  Type:DNA  Length:9
                                         
                 4l5s F   3 GATATCGCT  11


Chain G from PDB  Type:DNA  Length:9
                                         
                 4l5s G   1 GCGATATCG   9


Chain H from PDB  Type:DNA  Length:12
                                            
                 4l5s H   1 GCGATATCGCTG  12
                                    10  


Chain I from PDB  Type:DNA  Length:12
                                            
                 4l5s I   1 GCGATATCGCTG  12
                                    10
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4L5S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L5S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L5S)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        IFI2_MOUSE | Q9R002: 4jbj 4jbk 4l5q 4l5r 4l5t 4lnq

(-) Related Entries Specified in the PDB File

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