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(-) Description

Title :  CRYSTAL STRUCTURE OF P202 HIN1 IN COMPLEX WITH 20-MER DSDNA
 
Authors :  Q. Yin, Y. Tian, H. Wu
Date :  11 Jun 13  (Deposition) - 31 Jul 13  (Release) - 21 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.87
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Hin200, Ob Fold, Dsdna Binding Domain, Dna Binding Protein-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Yin, D. P. Sester, Y. Tian, Y. S. Hsiao, A. Lu, J. A. Cridland, V. Sagulenko, S. J. Thygesen, D. Choubey, V. Hornung, T. Walz, K. J. Stacey, H. Wu
Molecular Mechanism For P202-Mediated Specific Inhibition O Aim2 Inflammasome Activation.
Cell Rep V. 4 327 2013
PubMed-ID: 23850291  |  Reference-DOI: 10.1016/J.CELREP.2013.06.024

(-) Compounds

Molecule 1 - INTERFERON-ACTIVABLE PROTEIN 202
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSMT3
    Expression System Strain: BL21 DE3 RIPL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: HIN-200 1
    Gene: IFI202, IFI202A, IFI202B
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Strain: CZECH II
    Synonym: IFI-202, INTERFERON-INDUCIBLE PROTEIN P202, LUPUS SUSCEPTIBILITY PROTEIN P202
 
Molecule 2 - 20-MER DNA
    Chains: A, B
    Engineered: YES
    Other Details: CHEMICALLY SYNTHESIZED 20-MER DNA
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1NA1Ligand/IonSODIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN C:50 , GLU C:80 , ASN C:81 , PHE C:99BINDING SITE FOR RESIDUE NA C 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L5R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4L5R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L5R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L5R)

(-) Exons   (0, 0)

(no "Exon" information available for 4L5R)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:20
                                                    
                 4l5r A   1 GCGATGGTTAACCATCGCTG  20
                                    10        20


Chain B from PDB  Type:DNA  Length:20
                                                    
                 4l5r B   1 GCGATGGTTAACCATCGCTG  20
                                    10        20


Chain C from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eee...eeeeeeee...eee....eeeeeeeee....eeeeee.hhhhhhhh....eeeee.eeee..eeee....eeee.hhhhh...hhhhhhhhhh..hhhhhh......eeeeeeeeeeeee....eeeeee....eeeeee..............eeeeeeeee......eee.....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4l5r C  46 TPKKNISKGAVLHEKPMTVMVLTATEPFNYKEGKENMFHATVATESKYYRVKVFNMDLKEKFTENQFITISKYFNSSGILEINETATVSEAAPNQMFEVPKNIIRSAKETLKISKIKELDSGTLIYGVFAVEKKKVNDKSITFKIKDNEDNIKVVWDKEQHNINYEKGDKLQLFSFHLRKGNGKPILHSGNHSFIKGE 243
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4L5R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L5R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L5R)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IFI2_MOUSE | Q9R002: 4jbj 4jbk 4l5q 4l5s 4l5t 4lnq

(-) Related Entries Specified in the PDB File

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